Table 1.
The basic information for PeFAD genes identified in this study
| No. | Gene name | Gene ID | Chromosome ID | Start | End | Strand | Gene length (bp) |
CDS length (bp) |
Protein length (aa) |
Molecular weight |
Theoretical pI |
Histidine mitif 1 |
Histidine motif 2 |
Histidine motif 3 |
CDS types |
Conseved domain (SMART) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | PeSAD1 | PH02Gene19500 | hic_scaffold_6 | 76,326,969 | 76,328,496 | - | 1528 | 1233 | 410 | 45375.91 | 8.01 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 2 | PeSAD2 | PH02Gene12257 | hic_scaffold_13 | 45,053,379 | 45,054,600 | + | 1222 | 1080 | 359 | 40816.3 | 5.69 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 3 | PeSAD3 | PH02Gene12258 | hic_scaffold_13 | 45,085,715 | 45,088,532 | + | 2818 | 696 | 231 | 25455.56 | 4.57 | EENRHG | N/A | N/A | Partial | FA_desaturase_2 (PF03405) |
| 4 | PeSAD4 | PH02Gene12259 | hic_scaffold_13 | 45,105,263 | 45,108,251 | + | 2989 | 1233 | 410 | 46141.57 | 6.29 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 5 | PeSAD5 | PH02Gene12260 | hic_scaffold_13 | 45,137,004 | 45,138,246 | + | 1243 | 987 | 328 | 36967.85 | 6.04 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 6 | PeSAD6 | PH02Gene12261 | hic_scaffold_13 | 45,164,684 | 45,167,027 | + | 2344 | 1239 | 412 | 46485.12 | 7.15 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 7 | PeSAD7 | PH02Gene31589 | hic_scaffold_13 | 45,214,613 | 45,215,578 | + | 966 | 498 | 165 | 18814.54 | 5.94 | EENRHG | N/A | N/A | Partial | FA_desaturase_2 (PF03405) |
| 8 | PeSAD8 | PH02Gene31588 | hic_scaffold_13 | 45,220,073 | 45,220,819 | + | 747 | 351 | 116 | 12787.71 | 7.83 | N/A | DEKRHE | N/A | Partial | FA_desaturase_2 (PF03405) |
| 9 | PeSAD9 | PH02Gene31586 | hic_scaffold_13 | 45,250,910 | 45,254,174 | - | 3265 | 1260 | 419 | 47425.09 | 6.45 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 10 | PeSAD10 | PH02Gene31584 | hic_scaffold_13 | 45,303,149 | 45,303,701 | - | 553 | 474 | 157 | 18307.87 | 9.5 | EENRHG | N/A | N/A | Partial | FA_desaturase_2 (PF03405) |
| 11 | PeSAD11 | PH02Gene12263 | hic_scaffold_13 | 45,324,512 | 45,325,670 | + | 1159 | 1011 | 336 | 38142.16 | 5.29 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 12 | PeSAD12 | PH02Gene07862 | hic_scaffold_14 | 75,138,201 | 75,139,990 | + | 1790 | 1137 | 378 | 42764.87 | 7.19 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 13 | PeSAD13 | PH02Gene07237 | hic_scaffold_14 | 80,439,738 | 80,444,570 | - | 4833 | 1200 | 399 | 45254.49 | 6.33 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 14 | PeSAD14 | PH02Gene20845 | hic_scaffold_15 | 29,521,868 | 29,525,430 | + | 3563 | 741 | 246 | 27295.37 | 6.24 | EGKRHY | DERRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 15 | PeSAD15 | PH02Gene15757 | hic_scaffold_15 | 95,578,546 | 95,579,542 | + | 997 | 687 | 228 | 26169.23 | 8.7 | N/A | DEKRHE | N/A | Partial | FA_desaturase_2 (PF03405) |
| 16 | PeSAD16 | PH02Gene05757 | hic_scaffold_16 | 7,947,088 | 7,950,134 | + | 3047 | 1200 | 399 | 45290.61 | 6.43 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 17 | PeSAD17 | PH02Gene40771 | hic_scaffold_17 | 54,111,263 | 54,116,359 | + | 5097 | 1188 | 395 | 45041.32 | 6.48 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 18 | PeSAD18 | PH02Gene36679 | hic_scaffold_20 | 4,886,972 | 4,890,271 | + | 3300 | 1188 | 395 | 44710.03 | 6.42 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 19 | PeSAD19 | PH02Gene46704 | hic_scaffold_21 | 53,781,875 | 53,784,182 | + | 2308 | 1287 | 428 | 46657.29 | 7.22 | EENRHG | DERRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 20 | PeSAD20 | PH02Gene14299 | hic_scaffold_23 | 48,366,094 | 48,370,535 | + | 4442 | 1185 | 394 | 44956.12 | 7.13 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 21 | PeSAD21 | PH02Gene44797 | hic_scaffold_23 | 73,114,501 | 73,115,835 | + | 1335 | 1218 | 405 | 44938.25 | 8.43 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 22 | PeSAD22 | PH02Gene41206 | hic_scaffold_23 | 73,123,140 | 73,125,194 | + | 2055 | 1236 | 411 | 46134.48 | 7.19 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 23 | PeSAD23 | PH02Gene41208 | hic_scaffold_23 | 73,151,331 | 73,152,665 | - | 1335 | 1218 | 405 | 44968.27 | 8.43 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 24 | PeSAD24 | PH02Gene28642 | hic_scaffold_24 | 26,003,718 | 26,009,357 | - | 5640 | 1182 | 393 | 44880.99 | 8.22 | EENRHG | DEKRHE | N/A | Complete | FA_desaturase_2 (PF03405) |
| 25 | PeSAD25 | PH02Gene24080 | hic_scaffold_2757 | 81,719 | 82,673 | - | 955 | 477 | 158 | 17749.3 | 5.83 | N/A | DEKCHG | N/A | Partial | FA_desaturase_2 (PF03405) |
| 26 | PeFAD2.1 | PH02Gene22841 | hic_scaffold_3 | 88,491,036 | 88,496,439 | - | 5404 | 1167 | 388 | 44307.1 | 8.45 | HECGHH | HRRHH | HVAHH | Complete | FA_desaturase (PF00487) |
| 27 | PeFAD2.2 | PH02Gene16801 | hic_scaffold_17 | 16,604,581 | 16,609,362 | + | 4782 | 1161 | 386 | 44077.92 | 8.63 | HECGHH | HRRHH | HVAHH | Complete | FA_desaturase (PF00487) |
| 28 | PeFAD6 | PH02Gene20531 | hic_scaffold_13 | 64,242,752 | 64,248,094 | + | 5343 | 1329 | 442 | 50969.26 | 9.18 | HDCAH | HDRHH | HVPHH | Complete | FA_desaturase (PF00487) |
| 29 | PeFAD3.1 | PH02Gene44248 | hic_scaffold_2 | 28,553,924 | 28,575,201 | - | 21,278 | 1194 | 397 | 45371.84 | 8.4 | HDCGH | HRIHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 30 | PeFAD3.2 | PH02Gene44250 | hic_scaffold_2 | 28,609,938 | 28,630,686 | - | 20,749 | 1194 | 397 | 45325.92 | 8.58 | HDCGH | HRIHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 31 | PeFAD3.3 | PH02Gene21566 | hic_scaffold_13 | 349,596 | 353,537 | - | 3942 | 1176 | 391 | 44943.39 | 8.93 | HDCGH | HRTHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 32 | PeFAD7.1 | PH02Gene00068 | hic_scaffold_15 | 51,724,798 | 51,728,190 | + | 3393 | 1347 | 448 | 50207.64 | 8.97 | HDCGH | HRTHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 33 | PeFAD7.2 | PH02Gene23551 | hic_scaffold_21 | 82,848,094 | 82,850,856 | + | 2763 | 1218 | 405 | 45608.43 | 8.99 | HDCGH | HRTHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 34 | PeFAD8.2 | PH02Gene16646 | hic_scaffold_4 | 380,222 | 383,958 | - | 3737 | 1275 | 424 | 48000.08 | 8.86 | HDCGH | HRTHH | HVIHH | Complete | FA_desaturase (PF00487) |
| 35 | PeFAD8.1 | PH02Gene13663 | hic_scaffold_2 | 28,512,939 | 28,523,496 | - | 10,558 | 450 | 149 | 17299.8 | 9.71 | N/A | N/A | HVIHH | Partial | FA_desaturase (PF00487) |
| 36 | PeFAD4.1 | PH02Gene39556 | hic_scaffold_18 | 19,787,694 | 19,789,046 | + | 1353 | 876 | 291 | 31284.38 | 9.09 | FQGHHR | HSWAH | HAAHH | Complete | TMEM189_B_dmain (PF10520) |
| 37 | PeFAD4.2 | PH02Gene24139 | hic_scaffold_22 | 48,180,260 | 48,181,155 | - | 896 | 615 | 204 | 21878.7 | 6.36 | N/A | N/A | HAAHH | Partial | TMEM189_B_dmain (PF10520) |
| 38 | PeFAD4.3 | PH02Gene39558 | hic_scaffold_18 | 19,834,563 | 19,835,264 | + | 702 | 513 | 170 | 18359.85 | 4.92 | FQGHHR | N/A | N/A | Partial | TMEM189_B_dmain (PF10520) |
| 39 | PeDES1.1 | PH02Gene40570 | hic_scaffold_3 | 74,351,567 | 74,357,270 | + | 5704 | 987 | 328 | 37967.77 | 8.79 | HELSH | HLEHH | HNEHH | Complete | FA_desaturase (PF00487) |
| 40 | PeDES1.2 | PH02Gene16913 | hic_scaffold_17 | 29,332,269 | 29,335,436 | - | 3168 | 981 | 326 | 37593.39 | 8.5 | HELSH | HLEHH | HNEHH | Complete | FA_desaturase (PF00487) |
| 41 | PeDES1.3 | PH02Gene02088 | hic_scaffold_24 | 51,356,905 | 51,360,358 | + | 3454 | 987 | 328 | 37783.66 | 8.77 | HELSH | HLEHH | HNEHH | Complete | FA_desaturase (PF00487) |
| 42 | PeSLD1 | PH02Gene30788 | hic_scaffold_3 | 33,818,104 | 33,820,342 | - | 2239 | 1386 | 461 | 51077.84 | 8.53 | HDSGHH | HNTHH | QIEHH | Complete | FA_desaturase (PF00487) |
| 43 | PeSLD2 | PH02Gene31223 | hic_scaffold_19 | 5,531,353 | 5,532,717 | - | 1365 | 1248 | 415 | 46608.5 | 8.87 | HDSGHH | HNTHH | QIEHH | Complete | FA_desaturase (PF00487) |