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. 2024 May 31;16(2):137–145. doi: 10.4274/jcrpe.galenos.2023.2023-5-10

Table 4. Genetic identification of the cases with variants of uncertain significance detected according to According to the American College of Medical Genetics and Genomics.

Gene/OMIM ID/MODY type

Variants/types of mutation

dsSNP

Zygosity

In silico prediction

Reference

HNF1A

600496

MODY3

c.481G>A

p.(Ala161Thr)

missense

rs201095611

Heterozygous

pBD/Del/DC

(9,10)

HNF1A

c.517G>A

p.(Val173Met)

missense

 NA

Heterozygous

PD/Del/DC

(11,12)

HNF1B

189907

MODY5

c.1006C>G

p.(His336Asp)

missense

rs138986885

Heterozygous

B/Tol/DC

(10)

HNF1B

c.1339+5G>A

p.?

splice site (novel)

NA

Heterozygous

NA/NA/DC

NA

HNF4A

125850

MODY1

c.473C>T

p.(Ala158Val)

missense

rs754143633

Heterozygous

PbD/Tol/DC

NA

BLK

613375

MODY11

c.497delA

p.(Asp166ValfsTer8)

deletion (novel)

NA

Heterozygous

NA/NA/DC

NA

BLK

c.569C>G

p.(Ser190Cys)

missense

rs200875749

Heterozygous

B/Del/DC

NA

PAX4

612225

MODY9

c.521G>T

p.(Arg174Leu)

missense

rs776151854

Heterozygous

PbD/Del/DC

(13)

INS

613370

MODY10

c.2455C>G

p.(Arg819Gly)

missense

rs1555738952

Heterozygous

B/Del/DC

NA

KLF11

610508

MODY7

c.673A>C

p.(Ser225Arg)

missense

rs200061013

Heterozygous

B/Tol/Poly

NA

ABCC8

600509

MODY12

c.2395A>G

p.(Lys799Glu)

missense

rs1336775990

Heterozygous

B/Del/DC

NA

RFX6

NA

MODY?

c.1782C>G

p.(His594Gln)

missense

rs4946206

Heterozygous

B/Tol/Poly

NA

dsSNP: the Single Nucleotide Polymorphism Database, In silico prediction: PolyPhen-2, SIFT: mutation tester, respectively, Polyphen predictions: B: bening, PD: possibly damaging, PbD: probably damaging, SIFT predictions: Del: deleterious, Tol: tolerated, mutation tester predictions: DC: disease-causing, Poly: polymorphism ?= unknown effect; NA: not available.

Transcripts: HNF1A(NM_000545.8), HNF4A(NM_000457.5), HNF1B(NM_000458.4), BLK(NM_001715.3), PAX4(NM_001366110.1), INS(NM_000208.4), KLF11(NM_003597.5), ABCC8(NM_000352.6), RFX6(NM_173560.4)