TABLE 3.
Genetic elements in the pSP102 insert
| ORF | Size (bp) | Predicted molecular mass of gene product (kDa) | Similarity to: | % Identity/ % similarity | Annotated gene name |
|---|---|---|---|---|---|
| 01 | 180 | 7.1 | H. pylori Hpn | 100/100 | hpn |
| 02 | 624 | 23.7 | ORF02 | ||
| 03 | 251 | 9.4 | B. subtilis 9.7-kDa hyp. protein | 35/61 | ORF03 |
| 04 | 2,760b | 106.1b | C. crescentus IleS | 49b/66b | ileS |
| E. coli IleS | 39b/56b | ||||
| 05 | 912 | 34.6 | A. tumefaciens TrbB | 28/47 | virB11 |
| E. coli TraG | 28/46 | ||||
| A. tumefaciens VirB11 | 21/39 | ||||
| H. pylori 26695 TIGR HP0525 | 29/53 | ||||
| 06 | 1,302 | 47.6 | S. typhimurium Flil | 44/60 | flil |
| A. tumefaciens Flil | 40/56 | ||||
| Y. enterocolitica YscN | 43/62 | ||||
| X. campestris HrpB6 | 43/62 | ||||
| E. amylovora HrcN | 41/62 | ||||
| 07 | 264 | 9.8 | B. subtilis FliQ | 45/65 | fliQ |
| E. coli FliQ | 51/73 | ||||
| S. typhimurium SpaQ | 30/47 | ||||
| Y. pseudotuberculosis YscS | 34/58 | ||||
| 08a | 780b | 28.6b | B. subtilis MurB | 31b/49b | murB |
First 393 nt present on pSP102.
Based on the complete gene sequences in the corresponding H. pylori 26695 region.