TABLE A2.
Gene List for the Subset of Whole Exome Panel Genes Sequenced at High Coverage and Read Depth
| Genes |
|---|
| ABL1 |
| ABRAXAS1 |
| ACVR1 |
| AIP |
| AKT1 |
| AKT2 |
| AKT3 |
| ALK |
| AMER1 |
| APC |
| AR |
| ARAF |
| ARID1A |
| ARID1B |
| ARID2 |
| ASXL1 |
| ATM |
| ATR |
| ATRX |
| AURKB |
| B2M |
| BAP1 |
| BARD1 |
| BCL2 |
| BCOR |
| BCORL1 |
| BLM |
| BMPR1A |
| BRAF |
| BRCA1 |
| BRCA2 |
| BRIP1 |
| CARD11 |
| CBFB |
| CCND1 |
| CCND2 |
| CCND3 |
| CCNE1 |
| CD274 |
| CDC73 |
| CDH1 |
| CDK12 |
| CDK4 |
| CDK6 |
| CDKN1B |
| CDKN1C |
| CDKN2A |
| CDKN2B |
| CHEK1 |
| CHEK2 |
| CIC |
| CLYBL |
| CREBBP |
| CRKL |
| CSF1R |
| CTNNB1 |
| CYLD |
| DAXX |
| DDR2 |
| DICER1 |
| DNMT3A |
| EGFR |
| EME1 |
| EPCAM |
| EP300 |
| EPHA2 |
| ERBB2 |
| ERBB3 |
| ERBB4 |
| ERCC2 |
| ESR1 |
| EZH2 |
| FANCA |
| FANCB |
| FANCC |
| FANCD2 |
| FANCE |
| FANCF |
| FANCG |
| FANCI |
| FANCL |
| FANCM |
| FAS |
| FAT1 |
| FBXW7 |
| FGF10 |
| FGF19 |
| FGF3 |
| FGF4 |
| FGFR1 |
| FGFR2 |
| FGFR3 |
| FGFR4 |
| FH |
| FLCN |
| FLT1 |
| FLT3 |
| FLT4 |
| FOXL2 |
| FUBP1 |
| FYN |
| GATA3 |
| GLI2 |
| GNA11 |
| GNA13 |
| GNAQ |
| GNAS |
| H3F3A |
| H3F3B |
| HIST1H3B |
| HNF1A |
| HRAS |
| ID2 |
| IDH1 |
| IDH2 |
| JAK1 |
| JAK2 |
| JAK3 |
| KAT6A |
| KDM5C |
| KDM6A |
| KDR |
| KIT |
| KLLN |
| KMT2A |
| KMT2C |
| KMT2D |
| KRAS |
| LCK |
| LYN |
| LZTR1 |
| MAP2K1 |
| MAP2K2 |
| MAP2K4 |
| MAP3K1 |
| MAX |
| MDM2 |
| MDM4 |
| MEF2B |
| MEN1 |
| MET |
| MITF |
| MLH1 |
| MLH3 |
| MPL |
| MRE11 |
| MSH2 |
| MSH3 |
| MSH6 |
| MST1R |
| MTOR |
| MUTYH |
| MYB |
| MYC |
| MYCL |
| MYCN |
| NBN |
| NF1 |
| NF2 |
| NFKBIA |
| NOTCH1 |
| NPM1 |
| NRAS |
| NSD1 |
| NTHL1 |
| NTRK1 |
| NTRK2 |
| NTRK3 |
| PALB2 |
| PBRM1 |
| PDCD1 |
| PDCD1LG2 |
| PDGFRA |
| PDGFRB |
| PER1 |
| PHOX2B |
| PIK3CA |
| PIK3R1 |
| PIM1 |
| PMS1 |
| PMS2 |
| POLD1 |
| POLE |
| POT1 |
| PPARG |
| PPP2R1A |
| PRDM1 |
| PRKAR1A |
| PRKDC |
| PTCH1 |
| PTEN |
| PTPN11 |
| RAD50 |
| RAD51C |
| RAD51D |
| RAF1 |
| RB1 |
| RET |
| RICTOR |
| RNF43 |
| ROS1 |
| RSPO1 |
| RSPO2 |
| RSPO3 |
| RUNX1 |
| SDHA |
| SDHAF2 |
| SDHB |
| SDHC |
| SDHD |
| SETD2 |
| SF3B1 |
| SLX4 |
| SMAD2 |
| SMAD4 |
| SMARCA4 |
| SMARCB1 |
| SMARCE1 |
| SMO |
| SOCS1 |
| SPEN |
| SPOP |
| SRC |
| STK11 |
| SUFU |
| TERC |
| TMEM127 |
| TNFAIP3 |
| TNFRSF14 |
| TOP1 |
| TOP2A |
| TP53 |
| TSC1 |
| TSC2 |
| U2AF1 |
| UBR5 |
| VHL |
| WRN |
| WT1 |
| YAP1 |
| YES1 |
| ZNRF3 |
| ABL2 |
| ACKR3 |
| ACSL3 |
| ACSL6 |
| AFDN |
| AFF1 |
| AFF3 |
| ARNT |
| ATF1 |
| ATIC |
| ATP1A1 |
| BCL11A |
| BCL11B |
| BCL2L11 |
| BCL2L2 |
| BCL3 |
| BCL6 |
| BCL9 |
| BRD4 |
| BTG1 |
| C15orf65 |
| CACNA1D |
| CALR |
| CAMTA1 |
| CARS |
| CASP8 |
| CBL |
| CCDC6 |
| CD74 |
| CD79A |
| CDH11 |
| CDK8 |
| CDKN2C |
| CDX2 |
| CEBPA |
| CHIC2 |
| CLTCL1 |
| CNBP |
| COX6C |
| CREB3L2 |
| CRTC3 |
| CTCF |
| CTNNA1 |
| DDIT3 |
| DDX41 |
| DDX6 |
| DEK |
| EBF1 |
| ECT2L |
| ELK4 |
| EPHA3 |
| ERCC1 |
| ERCC3 |
| ERG |
| ETV1 |
| ETV5 |
| ETV6 |
| EWSR1 |
| EXT1 |
| EXT2 |
| EZR |
| FAM46C |
| FCRL4 |
| FGF23 |
| FGFR1OP |
| FHIT |
| FLI1 |
| FNBP1 |
| FOXA1 |
| FOXO1 |
| FOXO3 |
| FOXP1 |
| FSTL3 |
| FUS |
| GATA2 |
| GID4 |
| GMPS |
| GRIN2A |
| HEY1 |
| HIST1H4I |
| HLF |
| HMGA2 |
| HMGN2P46 |
| HOOK3 |
| HOXA11 |
| HOXA13 |
| HOXA9 |
| HOXB13 |
| HOXD13 |
| HSP90AA1 |
| HSP90AB1 |
| IGF1R |
| IKZF1 |
| IL7R |
| IRF4 |
| ITK |
| JAZF1 |
| JUN |
| KAT6B |
| KCNJ5 |
| KDSR |
| KIAA1549 |
| KIF5B |
| KLF4 |
| KLHL6 |
| KLK2 |
| LHFPL6 |
| LIFR |
| LPP |
| LRP1B |
| MAF |
| MAML2 |
| MCL1 |
| MDS2 |
| MECOM |
| MLF1 |
| MLLT10 |
| MLLT11 |
| MLLT3 |
| MN1 |
| MSI2 |
| MUC1 |
| MYD88 |
| NCOA2 |
| NDRG1 |
| NFIB |
| NFKB2 |
| NIN |
| NKX2-1 |
| NOTCH2 |
| NR4A3 |
| NUP214 |
| NUP93 |
| NUP98 |
| NUTM1 |
| OLIG2 |
| PAFAH1B2 |
| PAX3 |
| PAX5 |
| PAX8 |
| PBX1 |
| PCM1 |
| PDE4DIP |
| POU2AF1 |
| PRCC |
| PRRX1 |
| PTPRC |
| RAC1 |
| RHOH |
| RMI2 |
| RPL22 |
| RPN1 |
| RUNX1T1 |
| SBDS |
| SDC4 |
| SETBP1 |
| SFPQ |
| SLC34A2 |
| SNX29 |
| SOX10 |
| SOX2 |
| SPECC1 |
| SPRED1 |
| SRGAP3 |
| SRSF2 |
| SRSF3 |
| STAT3 |
| STAT5B |
| STIL |
| SUZ12 |
| SYK |
| TAF15 |
| TBXT |
| TCEA1 |
| TCF7L2 |
| TERT |
| TET1 |
| TFRC |
| TGFBR1 |
| TGFBR2 |
| THRAP3 |
| TPM3 |
| TPM4 |
| TRIM27 |
| TRRAP |
| TSHR |
| USP6 |
| VTI1A |
| WDCP |
| WISP3 |
| WWTR1 |
| XPC |
| YWHAE |
| ZBTB16 |
| ZNF217 |
| ZNF331 |
| ZNF384 |
| ZNF521 |
| ABCB11 |
| ACD |
| ACVR1B |
| ADGRA2 |
| AJUBA |
| ALOX12B |
| ANKRD26 |
| APLNR |
| ARFRP1 |
| ARHGAP35 |
| ARHGEF12 |
| ARID5B |
| ASPSCR1 |
| ASXL2 |
| AURKA |
| AXIN1 |
| AXIN2 |
| AXL |
| BCL10 |
| BCL2L1 |
| BCL2L12 |
| BIRC3 |
| BRD3 |
| BTG2 |
| BTK |
| BUB1B |
| CBFA2T3 |
| CBLB |
| CD22 |
| CD70 |
| CD79B |
| CDH23 |
| CDKN1A |
| CHD2 |
| CHD4 |
| CHN1 |
| CIITA |
| CNOT3 |
| CREB1 |
| CREB3L1 |
| CRLF2 |
| CRTC1 |
| CSF3R |
| CTLA4 |
| CUL3 |
| CUL4A |
| CUX1 |
| CXCR4 |
| CYP17A1 |
| CYP2D6 |
| DDB2 |
| DDR1 |
| DDX3X |
| DIS3 |
| DIS3L2 |
| DKC1 |
| DMC1 |
| DNA2 |
| DNAJB1 |
| DOT1L |
| EED |
| EGLN1 |
| EIF1AX |
| EIF4A2 |
| ELF3 |
| ELOC |
| EME2 |
| EML4 |
| EMSY |
| EPHA5 |
| EPHA7 |
| EPHB1 |
| EPHB4 |
| ERC1 |
| ERCC4 |
| ERCC5 |
| ERCC6 |
| EREG |
| ERRFI1 |
| ETS1 |
| ETV4 |
| EXO1 |
| FAT3 |
| FBXO11 |
| FEN1 |
| FGF12 |
| FGF14 |
| FGF6 |
| FIP1L1 |
| FOXO4 |
| FRS2 |
| GABRA6 |
| GALNT12 |
| GATA1 |
| GATA4 |
| GATA6 |
| GEN1 |
| GLI1 |
| GOPC |
| GPC3 |
| GPS2 |
| GREM1 |
| GRM3 |
| GSK3B |
| H2AFX |
| HDAC1 |
| HGF |
| HIF1A |
| HIST1H3C |
| HLA-A |
| HRG |
| HSD3B1 |
| ID3 |
| IFNGR1 |
| IGF2 |
| IKBKE |
| INHBA |
| INPP4B |
| IRF1 |
| IRF2 |
| IRS2 |
| KDM5A |
| KEAP1 |
| KEL |
| KIF1B |
| LDLR |
| LIG1 |
| LMNA |
| LMO1 |
| LMO2 |
| LTK |
| MAFB |
| MAGI2 |
| MALT1 |
| MAP3K13 |
| MAPK1 |
| MAPK3 |
| MBD4 |
| MDC1 |
| MED12 |
| MERTK |
| MGA |
| MGMT |
| MKNK1 |
| MTAP |
| MTCP1 |
| MUS81 |
| MYH11 |
| MYH9 |
| NCOA3 |
| NCOA4 |
| NCOR1 |
| NFE2L2 |
| NFKBIE |
| NONO |
| NOTCH3 |
| NSD2 |
| NSD3 |
| NT5C2 |
| P2RY8 |
| PAK1 |
| PAK3 |
| PARP1 |
| PARP2 |
| PARP3 |
| PAX7 |
| PDGFB |
| PDK1 |
| PHF6 |
| PIK3C2B |
| PIK3C2G |
| PIK3CB |
| PIK3CD |
| PIK3CG |
| PIK3R2 |
| PLAG1 |
| PLCG2 |
| PML |
| POLD2 |
| POLD3 |
| POLD4 |
| POLH |
| POLQ |
| PPM1D |
| PPP2R2A |
| PPP6C |
| PREX2 |
| PRF1 |
| PRKACA |
| PRKCH |
| PRKCI |
| PRKN |
| PRSS1 |
| PRSS8 |
| PTCH2 |
| PTK2B |
| PTPN22 |
| PTPRD |
| PTPRO |
| PTPRT |
| QKI |
| RAD21 |
| RAD51 |
| RAD51B |
| RAD52 |
| RAD54B |
| RAD54L |
| RANBP2 |
| RARA |
| RASA1 |
| RBBP8 |
| RBM10 |
| RCAN1 |
| RECQL4 |
| REL |
| RELA |
| RHEB |
| RHOA |
| RINT1 |
| RIT1 |
| RPA1 |
| RPA2 |
| RPA3 |
| RPA4 |
| RPL10 |
| RPL5 |
| RPTOR |
| RRAS2 |
| SEM1 |
| SERPINB3 |
| SET |
| SGK1 |
| SH2B3 |
| SLIT2 |
| SMAD3 |
| SMARCA1 |
| SMC3 |
| SNCAIP |
| SOS1 |
| SOX9 |
| SPTA1 |
| SS18 |
| SSBP1 |
| STAG2 |
| STAT4 |
| STAT6 |
| TAF1 |
| TAL1 |
| TAL2 |
| TBX3 |
| TCF3 |
| TEK |
| TERF2IP |
| TET2 |
| TFE3 |
| TFEB |
| TFG |
| TIPARP |
| TLX3 |
| TNF |
| TOP3A |
| TOP3B |
| TRAF3 |
| TRAF7 |
| TSHZ3 |
| TYK2 |
| TYRO3 |
| UBE2T |
| VEGFA |
| WAS |
| XPA |
| XPO1 |
| XRCC1 |
| XRCC2 |
| XRCC3 |
| ZBTB2 |
| ZFHX3 |
| ZNF703 |
| ZRSR2 |