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. 2024 Nov 19;25(22):12435. doi: 10.3390/ijms252212435

Table 1.

Self-assembling molecules containing PNAs.

Sequence 1 Morphology 2 Application 3
Biotin-tagagtt-Lys-NH2 Fiber (after DNA hybridization) Hydrogel
Methacryloyl-Gly2-agtgaccg-OH/HPMA copolymer
Methacryloyl-Gly2-accaggcg-OH/HPMA copolymer
Methacryloyl-Gly2-ttctcttcttc-OH/HPMA copolymer
Methacryloyl-Gly2-cttcttctctt-OH/HPMA copolymer
Porous structure (after DNA hybridization) Hydrogel
Glu-tgagcttgtatagtcg-Glu *
Glu-caagctcacgactata-Glu *
Film and hollow capsule Delivery
aaaaaaa * Fiber (after cyanuric acid binding)
Fmoc-g(Bhoc)-OH Microsphere Photonic crystals
Organic solvents detection
Fmoc-g(Bhoc)-TPP
Fmoc-g(Bhoc)-BDP
Nanosphere
Spherical or flake-shaped aggregate
Catalysis
photodynamic therapy
Fmoc-g-aminopentanoic acid Sphere or nanoribbon Energy transfer processes
gc-NH2c
g-NH2
gg-NH2
Crystal Optoelectronic
Fmoc-gc-NH2 Sphere Fluorescence
C12-gg-NH2 Sphere n.r.
C12-agtgatctac-(Glu)4-NH2 Micelle n.r.
C12-tttccg-(Lys)2-NH2 Micelle n.r.
C12-tagacg-(Glu)2-NH2 Ellipsoidal micelle Separation of DNA oligomers
C12-ctgactga-(Glu)4-NH2 Spherical micelle n.r.
(C14)2-(AEEA)2-agtgatctac-(Glu)4-NH2 n.r. Liposomes (mixture with cholesterol and DSPC) for DNA delivery
(C14)2-agtgatctac-(Glu)4-NH2 n.r. Liposomes (mixture with cholesterol and DSPC) for DNA delivery
(C14)2-tttccg-(Lys)2-NH2 n.r. Liposomes (mixture with cholesterol and DSPC) for DNA delivery
LysLys(Lys(Lys-t7))(Gly)3(Ala)3Lys(palmitoyl)-NH2 Fiber Hydrogels
Boc-(Phe)2-tz-AN(Boc)2-aeg-OEthyl
Boc-(Phe)2-tz-GN(Boc)2-aeg-OEthyl
Hollow nanoparticle
Hollow nanoparticle
Encapsulation
Supercapacitors
a-(Phe)2-OH or g-(Phe)2-OH
aa-(Phe)2-OH or gg-(Phe)2-OH
c-(Phe)2-OH or cc-(Phe)2-OH
t-(Phe)2-OH or tt-(Phe)2-OH
Amorphous conglomerate
Fibrous nanostructure
Entwined fiber
Entwined fiber
n.r.
gc−(Phe)2
gc−(Phe)2−NH2
(Phe)2−gc
(Phe)2−gc−NH2
Spherical aggregate
Spherical aggregate
Spherical aggregate
Spherical aggregate
n.r.
(Trp)2−gc−NH2
(Trp)2−at−NH2
Spherical aggregate/ intertwined fiber
Spherical aggregate
n.r.
(Phe)4−gc−NH2
(Phe)4−at−NH2
Vesicle like
Twisted fiber
n.r.
c-Phe-g-Phe-NH2
(c-Phe-g-Phe)2-NH2
t-Phe-a-Phe-NH2
(t-Phe-a-Phe)2-NH2
Globular aggregate
Thin plates
Globular aggregates
Globular aggregates
n.r.
c-LeuValAlaGlyLys-NH2 n.r. Hydrogel for CEST-MRI
Ac-ttctctctga-PEG-(PheLysPheGlu)2-NH2
Ac-(PheLysPheGlu)2-PEG-tttctaatgt-Lys-NH2
Fibrils Hydrogels
Ac-ac-FEFK-NH2
Ac-tg-FEFK-NH2
Entangled fibers Hydrogel
a-(PheAsp)2(PheLys)2-OH
g-(PheAsp)2(PheLys)2-OH
t-(PheAsp)2(PheLys)2-OH
c-(PheAsp)2(PheLys)2-OH
Entangled fibers
Entangled fibers
Thin fibers/spherical nanostructures
Thin fibers/spherical nanostructures
Hydrogel
Hydrogel
Hydrogel
Hydrogel
t-ArgGlyAspPhePheLys(rhodamine)-NH2
a-ArgGlyAspPhePheLys(naphthalimide)-NH2
Crosslinked spherical fibers
Crosslinked fibers
Encapsulation cancer cells
Ac-VLTKVKTKVDPPTKVQVKVFV-(PEG10)2-tgttacgact-NH2
Ac-VLTKVKTKVDPPTKVQVKVFV-(PEG10)2-agtcgtaaca-NH2
Fiber (after duplex assembly) hydrogel
aγmpataγmpgcgtγmptcac-NH2
gγmpctaγmpttgaγmpgtaa-NH2
gγmpacaγmptcttγmpactc-NH2
cγmptggγmpcgtgγmpcgga-NH2
cγmpgccγmpagccγmpctcg-NH2
biotin-gγmptgaγmpaccgγmpaggg-NH2
aγmpgttγmpttgaγmptgtc-NH2
Cy3-aγmpaaaγmpctacγmpagaa-NH2
tγmpccgγmpcattγmpctgt-NH2
Fiber (after combination of all nine single strand PNAs)
(aatagcgttcac)γSer-NH2
(gctattgagtaa)γSer-NH2
(gacatcttactc)γSer-NH2
(ctggcgtgcgga)γSer-NH2
(cgccagccctcg)γSer-NH2
biotin-DEG-(gtgaaccgaggg)γSer-NH2
(agttttgatgtc)γSer-NH2
TAMRA-DEG-(aaaactacagaa)γSer-NH2
(tccgcattctgt)γSer-NH2
Nanofiber (after a combination of all nine single-strand PNAs)
tγLyscaaγLyscatcγAlaagtγAlacD-NH2
tγLyscaaγLyscatcγLeuagtγLeucD-NH2
DtγAlacaaγAlacatcγGluagtγGluc-Gly-NH2
tγLyscaaγLyscatγAlacaγAlagD-NH2
tγLyscaγLysacγAlaatγAlacD-NH2
Spherical assembly (micelles) n.r.
(C12)-PEG3-agcattaa-Lys-PEG3-TAMRA
(C12)-PEG3-(agcattaa)γmp-Lys-PEG3-TAMRA
Ellipsoid nanostructures Anticancer
cgtacaaacttagacaccag-Lys3-NH2
Lys-ctggtgtcta-NH2 + Ac-agtttgtacg-(CH2)3SH
ctggγSertgtγSerctaγSer-Lys-NH2+ Ac-agtttgtacg-(CH2)3SH
Monolayer (in duplex form with complementary PNA strand) Electrocatalytic reactions

1 * = the C-terminal end is not specified; HPMA = N-(2-hydroxypropyl)methacrylamide; Bhoc = benzytriloxycarbonyl; TPP = 5-(4-aminophenyl)-10,15,20-triphenyl porphyrin; BDP= 10-(4-aminophenyl)-5,5-difluoro-1,3,7,9-tetramethyl-5H-dipyrrolo [1,2-c:2′,1′-f][1,3,2]diazaborinin-4-ium-5-uide; AEEA = 2-aminoethoxy-2-ethoxy acetic acid; tz = triazole; aeg = aminoethylglycine; PEG = 8-amino-3,6-dioxaoctanoic acid; γmp = miniPEG-gamma-PNA; γSer = Ser-gamma-PNA; γLys = Lys-gamma-PNA; γAla = Ala-gamma-PNA; γLeu = Leu-gamma-PNA; γGlu = Glu-gamma-PNA; D = 4-dimethylamino-naphthalimide PNA monomer; TAMRA= 5-Carboxytetramethylrhodamine; PEG3= 11-amino-3,6,9-trioxaundecanoic acid linker. 2 DSPC = distearoylphosphatidylcholine. 3 n.r. = not reported; CEST = chemical exchange saturation transfer; MRI = magnetic resonance imaging.