Table 3.
Characterization of the SNPs associated with CAS susceptibility.
| CM7555 | IFM61407 | Chromosome | Position | Ref | Alt | Gene | Variant Type | Function |
|---|---|---|---|---|---|---|---|---|
| X | NC_007195.1 | 1182496 | G | A | Afu2g04280 | upstream_gene_variant | asparaginase, putative | |
| X | NC_007196.1 | 3242018 | T | C | Afu3g12290 | 5_prime_UTR_variant | pre-mRNA splicing factor Dim1 | |
| X | NC_007196.1 | 3242454 | A | C | Afu3g12300 | 5_prime_UTR_variant | 60S ribosomal protein L22, putative | |
| X | NC_007196.1 | 3511190 | C | T | Afu3g13230 | missense_variant | AT DNA binding protein, putative | |
| X | NC_007196.1 | 3512039 | G | A | Afu3g13230 | missense_variant | AT DNA binding protein, putative | |
| X | NC_007196.1 | 3514244 | T | C | Afu3g13230 | upstream_gene_variant | AT DNA binding protein, putative | |
| X | NC_007196.1 | 3519307 | G | A | Afu3g13260 | synonymous_variant | Rad2-like endonuclease, putative | |
| X | NC_007196.1 | 3520699 | G | T | Afu3g13260 | synonymous_variant | Rad2-like endonuclease, putative | |
| X | NC_007196.1 | 3528767 | C | T | Afu3g13300 | missense_variant | hypothetical protein | |
| X | NC_007196.1 | 3543581 | T | A | Afu3g13390 | 3_prime_UTR_variant | vacuolar ATP synthase subunit d, putative | |
| X | NC_007196.1 | 3546410 | C | T | Afu3g13400 | synonymous_variant | nucleolar protein nop5 | |
| X | NC_007198.1 | 2400034 | T | C | Afu5g09320 | synonymous_variant | signal transduction protein Syg1, putative | |
| X | NC_007198.1 | 2799527 | G | A | Afu5g10940 | upstream_gene_variant | hypothetical protein | |
| X | X | NC_007198.1 | 3545720 | A | G | Afu5g13510 | missense_variant | cell cycle control protein (Cwf8), putative |
| X | NC_007199.1 | 1516436 | C | T | Afu6g06880 | 3_prime_UTR_variant | negative regulator of DNA transposition (Rtt106), putative | |
| X | NC_007199.1 | 1736813 | T | C | Afu6g07640 | synonymous_variant | lysyl-tRNA synthetase | |
| X | NC_007200.1 | 371671 | C | T | Afu7g01430 | upstream_gene_variant | opsin, putative | |
| X | X | NC_007200.1 | 374641 | T | C | Afu7g01440 | missense_variant | hypothetical protein |
| X | NC_007200.1 | 409263 | C | A | Afu7g01560 | synonymous_variant | FAD dependent oxidoreductase, putative | |
| X | X | NC_007200.1 | 532236 | T | A | Afu7g01970 | missense_variant | RTA1 domain protein, putative |