Table 1.
Paramyxo-, adeno-, parvo-, and picornaviruses identified in Zambian rodents.
| Site * | Sample ID | Species # | Tissue † | Milanzi Virus | Lupande Virus | MAdV-4 | Mwangazi Virus | Nyamadzi Virus | Aichivirus A |
|---|---|---|---|---|---|---|---|---|---|
| 1 | A104 | MN | K/L | 87 ¶ | 100 | 100 | |||
| 1 | A121L | MN | L | 53 | |||||
| 1 | A124K | MN | K/L | 10 | 38 | ||||
| 1 | A131K | MN | K | 100 | 68 | ||||
| 1 | A126K | MN | K/L | 100 | |||||
| 1 | A138 | MN | K | 3 | 99 | 100 | |||
| 1 | A13LV | MN | LV | 2 | 9 | ||||
| 1 | A14 | MN | K/LV | 84 | 9 | ||||
| 1 | A17L | MN | L | 100 | |||||
| 1 | A46L | MN | L | 90 | |||||
| 1 | A48K | MN | K | 45 | 100 | ||||
| 1 | A87L | MN | L | 71 | |||||
| 1 | A93 | MN | K | 12 | 12 | ||||
| 1 | A99L | MN | L | 37 | 42 | ||||
| 1 | A102 | MN | K/L | 100 | |||||
| 1 | A105 | MN | K/L | 9 | |||||
| 1 | A115 | MN | K/L | 15 | |||||
| 1 | A127 | MN | K/L | 70 | 18 | ||||
| 1 | A128 | MN | K/L | 93 | 100 | ||||
| 1 | A24 | MN | K/LV | 11 | 40 | ||||
| 1 | A27 | MN | L/LV | 28 | |||||
| 1 | A29 | MN | K/LV | 5 | 6 | ||||
| 1 | A30 | MN | L/S | 63 | |||||
| 1 | A39 | MN | L/S | 4 | 100 | ||||
| 1 | A58 | MN | K/L | 85 | 99 | 23 | |||
| 1 | A59 | MN | K/L | 22 | |||||
| 1 | A60 | MN | K/LV | 32 | |||||
| 1 | A63 | MN | L | 43 | |||||
| 1 | A64 | MN | K | 8 | 99 | ||||
| 1 | A80 | MN | L | 12 | 98 | ||||
| 1 | A83 | MN | L | 93 | 100 | ||||
| 1 | A85 | MN | K/L | 43 | |||||
| 1 | A89 | MN | K | 3 | |||||
| 1 | A95 | MN | K | 32 | 59 | 76 | |||
| 1 | A96 | MN | K | 27 | |||||
| 1 | A97 | MN | K | 86 | |||||
| 1 | A98 | MN | K/L | 37 | |||||
| 1 | A119 | MN | K/L | 27 | |||||
| 1 | A15 | MN | L/LV | 62 | |||||
| 1 | A16K | RR | K | 100 | 100 | ||||
| 1 | A18 | MN | K/L/LV | 53 | |||||
| 1 | A22 | MN | L/S/K | 67 | |||||
| 1 | A25 | MN | K/L/LV | 14 | |||||
| 1 | A32 | MN | K/L/LV/S | 3 | |||||
| 1 | A3 | MN | K/LV/S | 2 | 80 | ||||
| 1 | A4L | MN | L | 5 | |||||
| 1 | A50 | MN | K/L/LV | 58 | |||||
| 1 | A65 | MN | K/L | 92 | 100 | ||||
| 1 | A67 | MN | K/LV/S | 2 | 5 | ||||
| 1 | A69 | MN | K/LV/S | 4 | |||||
| 1 | A6K | MN | K | 3 | |||||
| 1 | A72 | MN | K/L | 11 | |||||
| 1 | A7 | MN | L/LV/S | 17 | |||||
| 2 | K1 | MN | K/L/LV | 8 | |||||
| 2 | K2 | MN | K/L/LV | 5 | |||||
| 2 | K3 | MN | K/L/LV | 7 | |||||
| 2 | K6 | MN | K/LV/S | 5 | |||||
| 3 | NY2 | RR | K/L/LV/S | 17 | 100 | ||||
| 3 | NY4 | RR | K/L/LV/S | 100 |
* Trapping location: 1, 2, 3, or 4. # Species: MN = Mastomys natalensis; RR = Rattus rattus. † Tissue: K = kidney, L = lung, LV = liver, S = spleen; available nucleic acid extracts of an individual animal were pooled as indicated. ¶ Percent of genome coverage.