Table 1.
Overview of evolutionary pressures across the genome of VSIV. A dN/dS at each gene was computed using the MG94xREV model. The confidence interval was estimated using profile likelihood.
Gene | Codons | Tree length | dS | dN | dN/dS (95% CI) | Sites Under Selection (p ≤ 0.05) | Sites Under Selection/1000 Codons | ||
---|---|---|---|---|---|---|---|---|---|
Purifying | Positive | Purifying | Positive | ||||||
N | 422 | 0.176 | 0.814 | 0.011 | 0.019 (0.01–0.03) | 60 | 1 | 142.2 | 2.4 |
P | 265 | 0.259 | 0.882 | 0.092 | 0.167 (0.13–0.21) | 37 | 4 | 139.6 | 15.1 |
M | 229 | 0.238 | 1.062 | 0.032 | 0.041 (0.03–0.06) | 45 | 2 | 196.5 | 8.7 |
G | 511 | 0.263 | 0.933 | 0.089 | 0.136 (0.11–0.16) | 81 | 11 | 158.5 | 21.5 |
L | 2109 | 0.229 | 0.921 | 0.048 | 0.075 (0.07–0.09) | 342 | 24 | 162.2 | 11.4 |
Genome | 3536 | 0.230 | 0.912 | 0.051 | 0.081 (0.08–0.09) | 565 | 42 | 159.8 | 11.9 |