Table 2.
Episodes of positive diversifying selection on the echovirus 11 proteins.
| Proteins | Number of Sites Detected by Method | Evidence of Positive Selection | |||
|---|---|---|---|---|---|
| SLAC (p < 0.1) |
FUBAR (Posterior Probability ≥ 0.9) |
MEME (p < 0.1) |
|||
| VP1 | Sites under negative selection (dN/dS < 1) | 134 | 155 | 0 | NO |
| Sites under positive selection (dN/dS > 1) | 0 | 0 | 0 | ||
| Capsid | Sites under negative selection (dN/dS < 1) | 877 | 1150 | 0 | NO |
| Sites under positive selection (dN/dS > 1) | 0 | 0 | 6 | ||
SLAC = Single-likelihood ancestor counting; FUBAR= Fast unconstrained Bayesian approximation. MEME = Mixed effects model of evolution; dN = non-synonymous substitutions; dS = synonymous substitutions; VP1, Capsid = Viral proteins.