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. 2024 Nov 26;14:29378. doi: 10.1038/s41598-024-80753-z

Table 5.

Prediction of pharmacokinetics and physicochemical properties of compounds.

Id ID 7a 7c 11b 11c Id ID 7a 7c 11b 11c
Physicochemical Properties MW 724.22 792.14 660.18 516.14 Metabolism CYP1A2-inh 0.612 0.703 0.822 0.969
Vol 715.109 745.531 635.439 501.775 CYP1A2-sub 0.994 0.991 0.995 0.995
Dense 1.013 1.063 1.039 1.029 CYP2C19-inh 0.905 0.815 0.935 0.983
nHA 12 12 12 8 CYP2C19-sub 0.102 0.072 0.068 0.123
nHD 2 2 2 2 CYP2C9-inh 0.944 0.846 0.981 0.955
TPSA 148.92 148.92 152.08 99.48 CYP2C9-sub 0.139 0.148 0.072 0.244
nRot 9 9 11 5 CYP2D6-inh 0 0 0.007 0.017
nRing 7 7 5 5 CYP2D6-sub 0.008 0.008 0.011 0.028
MaxRing 9 9 9 9 CYP3A4-inh 0.781 0.435 0.975 0.906
nHet 14 16 14 10 CYP3A4-sub 0.968 0.973 0.942 0.952
fChar 0 0 0 0 Excretion CL (Clearance) 2.104 1.822 3.412 3.153
nRig 45 45 33 31 T12 0.01 0.004 0.012 0.067
Flex 0.2 0.2 0.333 0.161 Toxicity hERG Blockers 0.001 0.002 0.002 0.003
nStereo 0 0 0 0 H-HT 0.999 0.999 0.995 0.998
Solubility LogS −9.182 −9.894 −6.352 −6.552 DILI 0.995 0.994 0.993 0.985
LogD 5.362 5.47 4.308 4.492 AMES Toxicity 0.915 0.768 0.981 0.952
LogP 8.296 9.232 5.518 5.043 Rat Oral Acute Toxicity 0.737 0.702 0.118 0.874
ESOL Log S −11.34 −12.54 −8.72 −7.62 FDAMDD 0.999 0.998 0.997 0.996
Ali Log S −15.66 −16.97 −12.50 −10.25 Skin Sensitization 0.024 0.016 0.025 0.068
Silicon-IT class Insoluble Insoluble Poorly Poorly Carcinogenicity 0.962 0.943 0.949 0.861
drug-likeness Lipinski Rule Rejected Accepted Accepted Accepted Eye Corrosion 0.003 0.003 0.003 0.003
Pfizer Rule Accepted Accepted Accepted Accepted Eye Irritation 0.022 0.019 0.021 0.017
Golden Triangle Rejected Rejected Rejected Rejected Respiratory Toxicity 0.086 0.073 0.482 0.052
Absorption Pgp-inh 0.981 0.993 0.997 0.997 Toxicophore Rules Non-Genotoxic Carcinogenicity 1 2 0 0
Pgp-sub 0.006 0.006 0.003 0.006 LD50_oral 0 1 0 0
HIA 0.013 0.007 0.013 0.008 Genotoxic Carcinogenicity 0 0 0 0
F (20%) 0.003 0.003 0.782 0.002 SureChEMBL 0 0 0 0
F (30%) 0.01 0.004 0.023 0.001 NonBiodegradable 1 1 1 1
Caco-2 −6.064 −6.008 −6.59 −6.417 Skin_Sensitization 1 2 0 0
MDCK 1.11E-05 8.64E-06 2.33E-05 2.12E-05 _Aquatic Toxicity Rule 4 4 2 2
Distribution BBB 0.002 0 0.034 0.571 Medicinal Chemistry Toxicophores 5 5 0 0
PPB 110.82% 114.38% 101.38% 99.04% QED 0.113 0.111 0.187 0.372
VDss 3.2 4.078 0.037 0.335 Synth 4.009 4.08 3.736 3.791
Fu 1.31% 0.88% 0.89% 0.87% Fsp3 0.105 0.105 0.25 0.154