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sTELLeR algorithm overview. (1) BAM or CRAM file can be provided as input. (2) sTELLeR identifies split reads and insertions. (3) The split reads and insertions are clustered using DBSCAN. (4) Sequences of clustered split reads and insertions are aligned to TE sequences provided. (5) Resulting matches are provided in a variant call format (VCF) file. Image adapted from (https://github.com/kristinebilgrav/sTELLeR).
