Table 1.
sTELLeR, TLDR, and xTEA runtimes and memory usage for GIAB samples.
Dataset | Coverage | Caller | Walltime (min) | CPU time (walltime×CPU) | Memory (GB) |
---|---|---|---|---|---|
HG002 PacBio | 52× | sTELLeR | 21 | 21 | 6 |
TLDR | 111 | 1110 | 23 | ||
xTEA | 1020 | 8161 | 12 | ||
HG002 ONT | 43× | sTELLeR | 83 | 83 | 2 |
TLDR | 231 | 2310 | 69 | ||
xTEA | 2136 | 17 083 | 12 | ||
HG003 PacBio | 61× | sTELLeR | 27 | 27 | 8 |
TLDR | 127 | 1265 | 25 | ||
xTEA | 1112 | 8893 | 13 | ||
HG003 ONT | 78× | sTELLeR | 149 | 149 | 3 |
TLDR | 468 | 7481 | 105 | ||
xTEA | 2328 | 18 621 | 12 | ||
HG004 PacBio | 60× | sTELLeR | 22 | 22 | 14 |
TLDR | 135 | 1346 | 20 | ||
xTEA | 1108 | 8866 | 12 | ||
HG004 ONT | 78× | sTELLeR | 160 | 160 | 3 |
TLDR | 471 | 7537 | 100 | ||
xTEA | 2435 | 19 480 | 14 |