Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2005 Jun 27;33(Web Server issue):W633–W637. doi: 10.1093/nar/gki391

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author 2005. Published by Oxford University Press. All rights reserved

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oupjournals.org

PMC Copyright notice

PathwayExplorer example: a screenshot of a pathway mapped with expression data. (i) The toolbar frame (the row including the organism field) offers various setup and visualization options. (ii) Hierarchical tree frame (on the left) enables browsing through all available pathway sections. (iii) The main frame (in the center) displays the citrate cycle pathway extracted from KEGG, which mapped with a yeast sporulation data set with seven different time points (0, 0.5, 2, 5, 7, 8 and 11.5 h). The color-coded boxes represent mapped genes. If more than just one gene ID (e.g. RefSeq) matches to a box, each box is split up into several horizontal elements. According to the number of experiments/time points (in this case seven time points), the boxes are split again into vertical columns which display the expression level of each time point. To visualize a mapped expression profile in a different way, one has to choose the corresponding horizontal row of a box (see Figure 2).