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. 2005 Jun 27;33(Web Server issue):W239–W243. doi: 10.1093/nar/gki405

Figure 2.

Figure 2

FTwin periodicities in multiple-sequence mode differ from those in single-sequence mode (window size 50, threshold parameter 3). (a) FTwin output for the cortexillin single sequence (PDB: 1D7M). The characteristic periodicity of 7/2 = 3.5 is not detected. (b) FTwin output for a cortexillin multiple sequence alignment (based on Blast hits with E-value cutoff 10−4 over the NCBI nonredundant protein database). It reveals the dominant periodicity of 3.5 over a substantial part of the protein and a periodicity of 7/3 = 2.3. The exact periodicities are shown when clicking on the colored bars.