Table 1.

Database members and their applications

Database	Application
ProDom (6)	BlastProDom (Blastall) (4)
PRINTS (7)	FingerPrintScan (8)
SMART (9)	Hmmpfam (http://hmmer.wustl.edu/)
TIGRFAMs (10)	Hmmpfam (http://hmmer.wustl.edu/)
Pfam (11)	Hmmpfam (http://hmmer.wustl.edu/)
PROSITE (12)	ScanRegExp + ProfileScan (13)
PIRSF (14)	Hmmpfam (http://hmmer.wustl.edu/)
SUPERFAMILY (15)	Hmmpfam (http://hmmer.wustl.edu/)
CATH (16)	Hmmpfam (http://hmmer.wustl.edu/)
PANTHER (17)	Hmmsearch (http://hmmer.wustl.edu/)
SignalPHMM	SignalPHMM (18)
Transmembrane	TMHMM2.0 (19)