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. 2005 Jun 27;33(Web Server issue):W605–W610. doi: 10.1093/nar/gki447

Table 1.

Conformational entropy parameters of allowed nets and transition barriers. β = 3/2ab, with Kuhn length b = 2.5a and a = 6 Å

Class of net D A1 A2 A3
Open-net-0 1 0 0 0
Open-net-1 s0 β/D 0 0
Open-net-2a s0s1 + s0s2 + s1s2 β(s1 + s2)/D β(s0 + s1)/D βs1/D
Open-net-2b s1(s0 + s2) βs1/D β(s0 + s1 + s2)/D βs1/D
Closed-net-0 s0 0 0 0
Closed-net-1 s0s1 β(s0 + s1)/D 0 0
Closed-net-2a s0s3(s1 + s2) + s1s2(s0 + s3) β(s0 + s3)(s1 + s2)/D β(s2 + s3)(s0 + s1)/D β(s0s2s1s3)/D
Closed-net-2b s1s3(s0 + s2) β(s0 + s2 + s3)s1/D β(s0 + s1 + s2)s3/D βs1s3/D
A transition barrier in closed-net-2ab (see Supplementary Material 2) s0s3(s1 + s4)(s2 + s5) + s1s4(s0 + s3)(s2 + s5) + s2s5(s0 + s3)(s1 + s4) β[(s1 + s4)(s0s3 + s2s5) + (s1 + s4)(s3s5 + s0s2) + s1s4 (s3 + s0 + s2 + s5)]/D β[(s0 + s3)(s1s4 + s2s5) + (s0 + s3)(s1s5 + s2s4) + s0s3 (s1 + s4 + s2 + s5)]/D β[s1s4(s0 + s3) + s0s3(s1 + s4) + (s2s0s4 + s5s3s1]/D
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