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. 2005 Jun 27;33(Web Server issue):W465–W467. doi: 10.1093/nar/gki458

Figure 1.

Figure 1

A contrived example for user constraints on the predicted gene structure. The top line shows the prediction of AUGUSTUS on a sequence of 5000 bp when no constraints are input. It predicted an incomplete gene with seven exons. The middle line shows six constraints: three constraints that enforce coding regions, two constraints that enforce intronic regions and one constraint that enforces the translation stop of a gene. The third line shows the prediction of AUGUSTUS under these constraints. This set of constraints is satisfiable and thus the prediction is consistent with all constraints.