Table 1.
The set of 22 sequence signatures used in the statistical analysis
| PROSITE identifier | Signature description | γi |
|---|---|---|
| PS00485 | Adenosine and AMP deaminase signature | −1.4940 |
| PS00197 | 2Fe-2S ferredoxins, iron–sulfur-binding region signature | 2.7733 |
| PS00636 | dnaJ domains signatures and profile | −2.4318 |
| PS00693 | Riboflavin synthase alpha chain family Lum-binding site signature | −1.3764 |
| PS00147 | Arginase family signatures | 1.8978 |
| PS00152 | ATP synthase alpha- and beta-subunits signature | −1.5161 |
| PS00043 | Bacterial regulatory proteins, gntR family signature | −0.9389 |
| PS00104 | EPSP synthase signatures | −0.6271 |
| PS00453 | FKBP-type peptidyl–prolyl cis–trans isomerase signatures/profile | −1.7875 |
| PS00178 | Aminoacyl-transfer RNA synthetases class-I signature | −1.0039 |
| PS00227 | Tubulin subunits alpha, beta and gamma signature | 4.5902 |
| PS00296 | Chaperonins cpn60 signature | −1.3363 |
| PS00061 | Short-chain dehydrogenases/reductases family signature | 0.7331 |
| PS00036 | Basic-leucine zipper (bZIP) domain signature and profile | 0.2328 |
| PS00559 | Eukaryotic molybdopterin oxidoreductases signature | −1.5359 |
| PS00287 | Cysteine protease inhibitors signature | −2.3378 |
| PS00107 | Protein kinases ATP-binding region signature | −0.0815 |
| PS00118 | Phospholipase A2 histidine active site | 2.3733 |
| PS00283 | Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature | −0.7184 |
| PS00606 | Beta-ketoacyl synthases active site | −0.0164 |
| PS00697 | ATP-dependent DNA ligase AMP-binding site | 2.0708 |
| PS01228 | Hypothetical cof family signatures | 0 |
γi is the value of the coefficient associated with the signature in the logistic model of Equation 1; PS01228 was selected as a reference and its coefficient was set to zero.