Loci |
PCR primers |
Sequence (5’–3’) |
PCR cycles |
References |
ITS |
ITS5 |
GGA AGT AAA AGT CGT AAC AAG G |
95 °C 5 min; (95 °C 30 s, 55 °C 30 s, 72 °C 1 min) × 35 cycles; 72 °C 10 min |
White et al. (1990)
|
ITS4 |
TCC TCC GCT TAT TGA TAT GC |
LSU |
LR0R |
GTA CCC GCT GAA CTT AAG C |
95 °C 5 min; (95 °C 50 s, 47 °C 30 s, 72 °C 1.5 min) × 35 cycles; 72 °C 10 min |
Vilgalys and Hester (1990)
|
LR7 |
TAC TAC CAC CAA GAT CT |
TEF |
EF1-728F |
CAT CGA GAA GTT CGA GAA GG |
95 °C 5 min; (95 °C 30 s, 55 °C 60 s, 72 °C 1 min) × 30 cycles; 72 °C 10 min |
Carbone and Kohn (1999); O’Donnell et al. (1998)
|
EF2 |
GGA RGT ACC AGT SAT CAT GTT |
RPB1 |
RPB1-Af |
GAR TGY CCD GGD CAY TTY GG |
95 °C 3 min; (94 °C 40 s, 60 °C 40 s, 72 °C 2 min) × 9 (94 °C 45 s, 55 °C 1.5 min, 72 °C 2 min) × 37 cycles; 72 °C 10 min |
Stiller and Hall (1997)
|
RPB1-Cr |
CCN GCD ATN TCR TTR TCC ATR TA |
ACT |
ACT-512F |
ATG TGC AAG GCC GGT TTC GC |
95 °C 3 min; (95 °C 1 min, 55 °C 1 min, 72 °C 1 min) × 30 cycles; 72 °C 10 min |
Voigt and Wostemeyer (2000)
|
ACT-783R |
TAC GAG TCC TTC TGG CCC AT |