Table 2.
Basic information of the selected SNPs in MIR3142HG.
| SNP ID | Position | Alleles A/B | Callrate | MAF | HWE-p | HaploReg v4.2 | |
|---|---|---|---|---|---|---|---|
| Case | Control | ||||||
| rs1582417 | 5:159897501 | A/G | 99.9% | 0.374 | 0.381 | 0.343 | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed, Selected eQTL hits |
| rs2431689 | 5:159899122 | A/G | 99.5% | 0.164 | 0.151 | 1.000 | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed |
| rs7727115 | 5:159901739 | T/G | 99.5% | 0.279 | 0.328 | 0.479 | Promoter histone marks, Enhancer histone marks, DNAse, Motifs changed, Selected eQTL hits |
| rs17057846 | 5:159902313 | A/G | 99.9% | 0.217 | 0.190 | 0.663 | Promoter histone marks, Enhancer histone marks, DNAse, Selected eQTL hits |
| rs2961920 | 5:159911506 | A/C | 99.9% | 0.465 | 0.397 | 0.926 | Enhancer histone marks, Proteins bound, Motifs changed, GRASP eQTL hits |
| rs58747524 | 5:159911584 | C/T | 99.4% | 0.275 | 0.231 | 0.614 | Enhancer histone marks, Proteins bound |
SNP: Single nucleotide polymorphism; HWE: Hardy–Weinberg equilibrium.
p < 0.05 indicates statistical significance.