Table 5. Binding Scores, Amino Acid Interactions, and Bond Lengths of the Selected Compounds within the Active Site of E. coli DNA Gyrase B.
Interacting
residues |
||||
---|---|---|---|---|
Hydrophobic
interaction |
||||
Compound | Binding score (S value) kcal/mol | H-bonding | π-cation, π-anion, π-alkyl interactions | van der Waals interactions |
9n | –11.42 | Asn46 | Arg76, Pro79, Ile94, Ile78, Ala47, Val71, Asp73 | Gly77, Glu50, Gln72, Met166, Val43, Thr165, Val120, Val167 |
9o | –11.28 | Asn46 | Arg76, Pro79, Ile94, Ile78, Ala47, Val71, Asp73 | Arg136, Gly77, Glu50, Gln72, Met166, Val43, Thr165, Val120, Val167, |
Ligand inhibitor | –11.76 | GLY77, Asn46, ASP73 | Glu50, Arg136, Ala47, Pro79, Ile94, Ile78 | Met166, Gln72, Val71, Val167, Val43, Thr165, Arg76 |