Table 6. Binding Scores, Amino Acid Interactions, and Bond Lengths of the Selected Compounds within the Active Site of ecDHFR.
Interacting
residues |
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---|---|---|---|---|
Hydrophobic
interaction |
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Compound | Binding score (S value) kcal/mol | H-bonding | π–π, π–σ, π–alkyl interactions | van der Waals interactions |
9n | –12.37 | Tyr59, | Ala7, Ala8, Leu54, Phe32, Met51, Phe48, Ile15, Tyr103, | Ala53, Gly52, Glyn29, Glu28, Ly26, Ala25, Ser24, Trp23, Ile21, Ser97, Val43, Thr47, Gly99, Gly98, |
9o | –12.37 | Tyr59 | Ala7, Ala8, Leu54, Phe32, Met51, Phe48, Ile15, Tyr103, | Ala53, Gly52, Glyn29, Glu28, Ly26, Ala25, Ser24, Trp23, Ile21, Met6, Ser97, Val43, Thr47 |
TMP | –12.07 | Glu28, Met6, Ser97, Tyr103 | Ala8, Leu54, Val43, Phe32, Met51 | Ala7, Leu64, Gly52, Met51, Met6, Glu28, Tyr59, Phe48, Thr47, Thr116, Ile21, Lys33, Gln29, |