Table 5.
Rd genes demonstrating best-fit based upon Equation 1 (>10%) to a non-Haemophilus organism
| Gene | % GC | L (amino acids) | ɛ (Equation 1) | Gene name | Ref. org. | % better fit > Haemophilus |
|---|---|---|---|---|---|---|
| HI0916 | 35 | 198 | 32.57 | Outer membrane protein | UU | 14.5 |
| HI1407 | 38 | 448 | 20.46 | traN-related protein | LP | 14.9 |
| HI1599 | 34 | 239 | 25.15 | H.influenzae predicted coding region HI1599 | SA | 15.1 |
| HI1470 | 38 | 254 | 30.6 | Iron chelatin ABC transporter | AA | 15.2 |
| HI0855 | 42 | 116 | 43.56 | Conserved hypothetical protein (protein homol. to inner membrane protein) | INFC | 15.5 |
| HI1411 | 39 | 172 | 28.81 | Terminase-small subunit | LP | 15.8 |
| HI1412 | 36 | 174 | 27.49 | Conserved hypothetical protein (protein homol. to phage-encoded prot, possible anti-repressor) | LP | 15.8 |
| HI1070 | 43 | 1305 | 20.06 | ATP-dependent helicase (hrpa) | PM | 16 |
| HI1570 | 42 | 170 | 47.82 | H.influenzae predicted coding region HI1570 (protein homol. to ribonuclease) | BH | 16.2 |
| HI1385 | 30 | 165 | 29.38 | Ferritin (rsgA) | UU | 16.3 |
| HI0535 | 44 | 262 | 36.19 | Urease accessory protein (ureH) | SE | 16.4 |
| HI0087 | 40 | 424 | 29.21 | Threonine synthase (thrC) | BS | 16.6 |
| HI1110 | 34 | 504 | 17.68 | D-xyloseABC transporter-ATP-binding protein (xylG) | LL | 16.9 |
| HI0601 | 31 | 217 | 33.77 | DNA transformation protein (tfoX) | MG | 17.1 |
| HI1384 | 31 | 182 | 26.07 | Ferritin (rsgA) | SA | 17.1 |
| HI0724 | 32 | 186 | 28.5 | Conserved hypothetical protein | T4 | 17.6 |
| HI0011 | 41 | 135 | 34.03 | DNA polymeraseIII psi subunit (holD) | LP | 17.9 |
| HI0228 | 30 | 125 | 41.22 | H.influenzae predicted coding region HI0228 (protein homol. to lipopolysaccharide biosynthesis protein) | T4 | 18 |
| HI0977 | 30 | 191 | 29.91 | Cell filamentation protein (fic) | UU | 18.5 |
| HI1410 | 41 | 395 | 24.46 | H.influenzae predicted coding region HI1410 (bacteriophage related) | SE | 19.9 |
| HI1422 | 45 | 191 | 45 | H.influenzae predicted coding region HI1422 (protein homol. to bacteriophage anti-repressor protein) | NG | 19.9 |
| HI0802 | 39 | 327 | 31.13 | DNA-directed RNApolymerase-alpha chain (rpoA) | T4 | 20.9 |
| HI1099 | 32 | 102 | 32.67 | H.influenzae predicted coding region HI1099 | MP | 21 |
| HI1040 | 31 | 334 | 24.77 | Type II restriction enzyme | BB | 21.1 |
| HI0787 | 28 | 201 | 28.46 | H.influenzae predicted coding region HI0787 | BB | 22.7 |
| HI0358 | 42 | 215 | 34.39 | Transcriptional activator-putative | SCHZ | 24.7 |
| HI0588 | 34 | 411 | 28.55 | N-carbamyl-l-aminoacid amido hydrolase | UU | 24.7 |
| HI0872 | 30 | 471 | 27.1 | Undecaprenyl-phosphate galactose phospho transferase (rfbP) | CJ | 26.5 |
| HI1514 | 49 | 631 | 24.19 | H.influenzae predicted coding region HI1514 (protein homol. to Mu-like prophage gp42) | VC | 26.7 |
| HI1718 | 35 | 262 | 25.08 | H.influenzae predicted coding region HI1718 (protein homol. to outer membrane protein) | PF | 26.7 |
| HI0352 | 26 | 232 | 24.22 | Conserved hypothetical protein (protein homology to sialyl transferase) | UU | 27.6 |
| HI1459 | 32 | 195 | 25.09 | Putative sigma factor | T4 | 28.4 |
| HI1225 | 36 | 106 | 32.69 | Conserved hypothetical protein (homol. to translation initiation factor) | UU | 28.5 |
| HI0054 | 31 | 266 | 22.52 | Uxuoperon regulator (uxuR) | PF | 32 |
| HI0053 | 35 | 343 | 25.14 | Zinc-type alcohol dehydrogenase | CB | 37.8 |
| HI0051 | 31 | 166 | 28.76 | Conserved hypothetical transmembrane protein (homol. to transport protein) | BB | 40.5 |
| HI1647 | 44 | 291 | 25.32 | Conserved hypothetical protein (homol. to pyridoxine biosynthesis protein) | SP | 45.5 |
| HI0258 | 27 | 331 | 25.96 | Glycosyl transferase-putative | GT | 46.3 |
| HI1041 | 32 | 304 | 26.95 | Modification methylase | PF | 50.5 |
| HI0688 | 25 | 103 | 32.43 | H.influenzae predicted coding region HI0688 (homol. to type V secretory pathway adhesin AidA) | MM | 53.7 |
| HI0871 | 28 | 306 | 26.06 | H.influenzae predicted coding region HI0871 (homol. to sialyl transferase) | BB | 54 |
| HI1578 | 27 | 323 | 23.91 | Glycosyl transferase | PF | 57.4 |
| HI0512 | 30 | 259 | 21.82 | TypeII restriction endonuclease (HindIIR) | CB | 58.8 |
| HI1392 | 31 | 309 | 23.16 | Modification methylase (hindIIIM) | FN | 63.6 |
| HI1287 | 49 | 444 | 27.07 | TypeI modification enzyme (hsdM) | NG | 66.6 |
| HI1393 | 26 | 300 | 17.94 | TypeII restriction endonuclease (hindIIIR) | FN | 86.3 |
| HI0513 | 26 | 519 | 17.01 | Modification methylase (hindIIM) | CB | 89.3 |
| HI0687 | 26 | 304 | 18.13 | Conserved hypothetical protein (homol. to drug/metabolite transport protein) | CB | 99.6 |