Table 3.

ARPIP performance in gap character inference by simulation. Performance is shown individually for each internal node

Lineage/Clade	Gap consistency/accuracy (%)
	Precision	Recall	F-score
Murinae	$98.74\pm 5.24$	$99.93\pm 1.10$	$99.31\pm 1.60$
Homo-Pan	$99.99\pm 0.11$	$99.9995\pm 0.02$	$99.9970\pm 0.06$
Homininae	$99.98\pm 0.20$	$99.94\pm 1.51$	$99.95\pm 0.97$
Catarrhini	$98.48\pm 1.75$	$99.96\pm 0.60$	$99.71\pm 0.99$
Euarchontoglires	$77.71\pm 17.22$	$85.49\pm 17.46$	$79.44\pm 15.07$