Table 3.
Statistics of repeat sequences information in L. tricolor genome.
| Repeat type | Sequence type | number | Total length /bp | Percentage/% |
|---|---|---|---|---|
| Transposable elements | ClassI:Retroelement | 105,510 | 22,770,499 | 9.67 |
| ClassI/DIRS | 788 | 94,560 | 0.04 | |
| ClassI/LINE | 18,423 | 4,251,852 | 1.81 | |
| ClassI/LTR/Cassandra | 4 | 238 | 0.00 | |
| ClassI/LTR/Caulimovirus | 13 | 852 | 0.00 | |
| ClassI/LTR/Copia | 1,498 | 508,694 | 0.22 | |
| ClassI/LTR/ERV | 19,853 | 5,159,655 | 2.19 | |
| ClassI/LTR/Gypsy | 7,958 | 2,342,537 | 0.99 | |
| ClassI/LTR/Pao | 891 | 274,255 | 0.12 | |
| ClassI/LTR/Unknown | 52,632 | 9,576,286 | 4.07 | |
| ClassI/LTR/Viper | 10 | 2,369 | 0.00 | |
| ClassI/SINE | 3,440 | 559,201 | 0.24 | |
| ClassII:DNA transposon | 172,286 | 36,557,336 | 15.52 | |
| ClassII/Academ | 23 | 3,234 | 0.00 | |
| ClassII/CACTA | 5,738 | 1,079,952 | 0.46 | |
| ClassII/Crypton | 271 | 65,746 | 0.03 | |
| ClassII/Dada | 205 | 47,657 | 0.02 | |
| ClassII/Ginger | 171 | 52,455 | 0.02 | |
| ClassII/Helitron | 23,031 | 5,315,165 | 2.26 | |
| ClassII/IS3EU | 3,576 | 1,269,943 | 0.54 | |
| ClassII/Kolobok | 200 | 13,602 | 0.01 | |
| ClassII/MITE | 31 | 4,420 | 0.00 | |
| ClassII/Maverick | 497 | 276,841 | 0.12 | |
| ClassII/Merlin | 330 | 62,240 | 0.03 | |
| ClassII/Mutator | 1,491 | 201,718 | 0.09 | |
| ClassII/Novosib | 61 | 3,826 | 0.00 | |
| ClassII/P | 86 | 6,499 | 0.00 | |
| ClassII/PIF-Harbinger | 799 | 89,620 | 0.04 | |
| ClassII/PiggyBac | 484 | 133,110 | 0.06 | |
| ClassII/Sola | 74 | 4,794 | 0.00 | |
| ClassII/Tc1-Mariner | 2,593 | 818,468 | 0.35 | |
| ClassII/Unknown | 112,725 | 23,551,799 | 10.00 | |
| ClassII/Zator | 2,794 | 444,190 | 0.19 | |
| ClassII/Zisupton | 63 | 4,942 | 0.00 | |
| ClassII/hAT | 17,043 | 3,107,115 | 1.32 | |
| Tandem repeats | microsatellite(1–9 bp units) | 360,331 | 7,054,330 | 3.00 |
| minisatellite(10–99 bp units) | 10,699 | 16,041,633 | 6.81 | |
| satellite(>=100 bp units) | 8,162 | 9,061,682 | 3.85 | |
| Total | 656,988 | 91,485,480 | 38.84 |