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. 2024 Oct 29;27(12):111283. doi: 10.1016/j.isci.2024.111283
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Recombinant anti-TROP2 humanized RS7 antibody Gilead pharma Cat #GS-1170562
Goat anti-Human IgG F(ab')2 Secondary Antibody ThermoFisher Cat # 31628; RRID: AB_429704
Annexin V-FITC BioLegend Cat #640906
Mouse anti-BrdU-FITC conjugate BioLegend Cat #364104; RRID: AB_2564481
Mouse anti-H2AX (S139), AF647 conjugate BioLegend Cat #613408; RRID: AB_2295046
Goat anti-mouse IgG, AF488 conjugate. ThermoFisher Cat # A-11001; RRID: AB_2534069
Donkey anti-Rabbit IgG, AF555 conjugate. ThermoFisher Cat #A-21428; RRID: AB_2535849
Goat anti-rat IgG(H+L), AF488 conjugate ThermoFisher Cat # A-11006; RRID: AB_2534074
Goat anti-mouse IgG (H+L), AF594 conjugate ThermoFisher Cat # A-11005; RRID: AB_2534073
Rabbit anti-TROP2 Cell Signaling Tech. Cat #47866; RRID: AB_2938529
Rabbit anti- pCHK1-S296 Cell Signaling Tech. Cat #2349; RRID: AB_2080323
Rabbit anti-pCHK1-S345 Cell Signaling Tech. Cat #2348; RRID: AB_331212
Mouse anti-CHK1 Cell Signaling Tech. Cat #2360; RRID: AB_2080320
Mouse anti-GAPDH Cell Signaling Tech. Cat #97166; RRID: AB_2756824
Rabbit anti-βActin Cell Signaling Tech. Cat #8457; RRID: AB_10950489
Mouse anti-βActin Cell Signaling Tech. Cat #3700; RRID: AB_2242334
Rabbit anti-pCHK2-T68 Cell Signaling Tech. Cat #2661; RRID: AB_331479
Rabbit anti-CHK2 Cell Signaling Tech. Cat #6334; RRID: AB_11178526
Rabbit anti-γH2AX (S139) Cell Signaling Tech. Cat #9718; RRID: AB_2118009
Rabbit anti-pKAP1-S824 Cell Signaling Tech. Cat #4127; RRID: AB_2209906
Mouse anti-KAP1 Cell Signaling Tech. Cat # 5868; RRID: AB_10707324
Rabbit anti-CyclinB1 Cell Signaling Tech. Cat #4138; RRID: AB_2072132
Rabbit anti-ATM Cell Signaling Tech. Cat #2873; RRID: AB_2062659
Rabbit anti-Ubiquityl PCNA (L164) Cell Signaling Tech. Cat #13439; RRID: AB_2798219
Mouse anti-PCNA Cell Signaling Tech. Cat #2586; RRID: AB_2160343
Rabbit anti-RAD51 Cell Signaling Tech. Cat #8875; RRID: AB_2721109
Anti-rabbit IgG, HRP-linked Cell Signaling Tech. Cat #7074P2; RRID: AB_2099233
Anti-mouse IgG, HRP-linked Cell signaling Tech. Cat #7076P2; RRID: AB_330924
Rabbit anti-RPA70, AF488 conjugate Abcam Cat #Ab199097
Rat anti-CldU Abcam Cat #ab6326; RRID: AB_305426
Rabbit anti-REV1 ProteinTech. Cat #17703-1-AP; RRID: AB_3085535
Rabbit anti- MAD2L2/REV7 ProteinTech Cat #12683-1-AP; RRID: AB_2139530
Mouse anti-IdU Novus biological Cat #NBP2-44056; RRID: AB_3307851

Biological samples

Patient biopsies Clinical trial (NCI). NCT02203513

Chemicals, peptides, and recombinant proteins

7-AAD Viability Staining Solution BioLegend Cat #420404
Crystal-violet Sigma-Aldrich Cat #C0775
5-Iodo-2'-deoxyuridine (IdU) Sigma-Aldrich Cat #I7125
5-Chloro-2'-deoxyuridine (CldU) Sigma-Aldrich Cat #C6891
DAPI nuclear stain Sigma-Aldrich Cat #D9542
Propidium iodide ThermoFisher Cat #P3566
Prolong glass antifade mountant ThermoFisher Cat #P36980
XTT (2,3-Bis-(2-Methoxy-4-Nitro-5-Sulfophenyl)-2H-Tetrazolium-5-Carboxanilide) ThermoFisher Cat #X6493
RPMI 1640 medium with glutamine ThermoFisher Cat #11835055
Restore™ PLUS Western Blot Stripping Buffer ThermoFisher Cat #46430
Bromodeoxyuridine (BrdU) Fisher Scientific Cat #BDB550891
Berzosertib Medkoo biosciences Cat #406258
Sacituzumab govitecan (SG) Gilead N/A
Control ADC (h679-CL2A-SN-38) Gilead N/A
D-α-Tocopherol polyethylene glycol 1000 succinate (TPGS) Sigma-Aldrich Cat #57668
JH-RE-06, TLS inhibitor Selleckchem Cat # S8850
Olaparib Medchem express Cat # HY-10162
Fetal Bovine serum BioWest LLC Cat # S1480

Critical commercial assays

Ssoadvanced SYBR® Green supermix BioRad Cat #1725270
PrimePCR™ SYBR® Green Assay: GAPDH BioRad Cat #10025636
iScript™ Advanced cDNA Synthesis Kit BioRad Cat #1725037

Deposited data

RNAseq datasets Gene expression omnibus (GEO) GSE278664

Experimental models: Cell lines

PEO1 Sigma-Aldrich #10032308
PEO1-olaJR Lab stored Huang et al.29
PEO1-olaR Lab stored Huang et al.29
PEO4 Sigma-Aldrich #10032309
OVCAR8 NCI-60 collection N/A
PEO1-Luc Lab stored This study
PEO1-olaR-Luc Benjamin Bitler lab Yamamoto et al.30
PEO1-olaJR-Luc Lab stored This study
OVCAR3 American Type Culture Collection (ATCC) #HTB-161
OVCAR5 NCI-60 collection N/A
UWB1.289 American Type Culture Collection (ATCC) #CRL-2945
TOV21G American Type Culture Collection (ATCC) #CRL-3577
SKOV3 NCI-60 collection N/A
A2780 Christina Annunziata Lab Hernandez et al.57

Experimental models: Mice

NSG mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ NCI inhouse N/A

Recombinant DNA

pDRGFP, HR assay Addgene Cat #26475
pCBASce1, HR assay Addgene Cat #26477

Software and algorithms

GraphPad Prism V. 10.1.1 Graphpad software LLC https://www.graphpad.com/
Image Studio LI-COR instruments https://www.licor.com
Zen Blue Carl-Zeiss microscopy https://www.zeiss.com/
Image-J National Cancer Institute. https://imagej.net/ij/
Aura image analysis software Spectral Instruments Imaging LLC. https://spectralinvivo.com/aura-imaging-software/
FlowJo V. 10.7.2 BD biosciences https://www.flowjo.com/