Antibodies |
|
Recombinant anti-TROP2 humanized RS7 antibody |
Gilead pharma |
Cat #GS-1170562 |
Goat anti-Human IgG F(ab')2 Secondary Antibody |
ThermoFisher |
Cat # 31628; RRID: AB_429704
|
Annexin V-FITC |
BioLegend |
Cat #640906 |
Mouse anti-BrdU-FITC conjugate |
BioLegend |
Cat #364104; RRID: AB_2564481
|
Mouse anti-H2AX (S139), AF647 conjugate |
BioLegend |
Cat #613408; RRID: AB_2295046
|
Goat anti-mouse IgG, AF488 conjugate. |
ThermoFisher |
Cat # A-11001; RRID: AB_2534069
|
Donkey anti-Rabbit IgG, AF555 conjugate. |
ThermoFisher |
Cat #A-21428; RRID: AB_2535849
|
Goat anti-rat IgG(H+L), AF488 conjugate |
ThermoFisher |
Cat # A-11006; RRID: AB_2534074
|
Goat anti-mouse IgG (H+L), AF594 conjugate |
ThermoFisher |
Cat # A-11005; RRID: AB_2534073
|
Rabbit anti-TROP2 |
Cell Signaling Tech. |
Cat #47866; RRID: AB_2938529
|
Rabbit anti- pCHK1-S296 |
Cell Signaling Tech. |
Cat #2349; RRID: AB_2080323
|
Rabbit anti-pCHK1-S345 |
Cell Signaling Tech. |
Cat #2348; RRID: AB_331212
|
Mouse anti-CHK1 |
Cell Signaling Tech. |
Cat #2360; RRID: AB_2080320
|
Mouse anti-GAPDH |
Cell Signaling Tech. |
Cat #97166; RRID: AB_2756824
|
Rabbit anti-βActin |
Cell Signaling Tech. |
Cat #8457; RRID: AB_10950489
|
Mouse anti-βActin |
Cell Signaling Tech. |
Cat #3700; RRID: AB_2242334
|
Rabbit anti-pCHK2-T68 |
Cell Signaling Tech. |
Cat #2661; RRID: AB_331479
|
Rabbit anti-CHK2 |
Cell Signaling Tech. |
Cat #6334; RRID: AB_11178526
|
Rabbit anti-γH2AX (S139) |
Cell Signaling Tech. |
Cat #9718; RRID: AB_2118009
|
Rabbit anti-pKAP1-S824 |
Cell Signaling Tech. |
Cat #4127; RRID: AB_2209906
|
Mouse anti-KAP1 |
Cell Signaling Tech. |
Cat # 5868; RRID: AB_10707324
|
Rabbit anti-CyclinB1 |
Cell Signaling Tech. |
Cat #4138; RRID: AB_2072132
|
Rabbit anti-ATM |
Cell Signaling Tech. |
Cat #2873; RRID: AB_2062659
|
Rabbit anti-Ubiquityl PCNA (L164) |
Cell Signaling Tech. |
Cat #13439; RRID: AB_2798219
|
Mouse anti-PCNA |
Cell Signaling Tech. |
Cat #2586; RRID: AB_2160343
|
Rabbit anti-RAD51 |
Cell Signaling Tech. |
Cat #8875; RRID: AB_2721109
|
Anti-rabbit IgG, HRP-linked |
Cell Signaling Tech. |
Cat #7074P2; RRID: AB_2099233
|
Anti-mouse IgG, HRP-linked |
Cell signaling Tech. |
Cat #7076P2; RRID: AB_330924
|
Rabbit anti-RPA70, AF488 conjugate |
Abcam |
Cat #Ab199097
|
Rat anti-CldU |
Abcam |
Cat #ab6326; RRID: AB_305426
|
Rabbit anti-REV1 |
ProteinTech. |
Cat #17703-1-AP; RRID: AB_3085535
|
Rabbit anti- MAD2L2/REV7 |
ProteinTech |
Cat #12683-1-AP; RRID: AB_2139530
|
Mouse anti-IdU |
Novus biological |
Cat #NBP2-44056; RRID: AB_3307851
|
|
Biological samples |
|
Patient biopsies |
Clinical trial (NCI). |
NCT02203513 |
|
Chemicals, peptides, and recombinant proteins |
|
7-AAD Viability Staining Solution |
BioLegend |
Cat #420404 |
Crystal-violet |
Sigma-Aldrich |
Cat #C0775 |
5-Iodo-2'-deoxyuridine (IdU) |
Sigma-Aldrich |
Cat #I7125 |
5-Chloro-2'-deoxyuridine (CldU) |
Sigma-Aldrich |
Cat #C6891 |
DAPI nuclear stain |
Sigma-Aldrich |
Cat #D9542 |
Propidium iodide |
ThermoFisher |
Cat #P3566 |
Prolong glass antifade mountant |
ThermoFisher |
Cat #P36980
|
XTT (2,3-Bis-(2-Methoxy-4-Nitro-5-Sulfophenyl)-2H-Tetrazolium-5-Carboxanilide) |
ThermoFisher |
Cat #X6493 |
RPMI 1640 medium with glutamine |
ThermoFisher |
Cat #11835055 |
Restore™ PLUS Western Blot Stripping Buffer |
ThermoFisher |
Cat #46430 |
Bromodeoxyuridine (BrdU) |
Fisher Scientific |
Cat #BDB550891 |
Berzosertib |
Medkoo biosciences |
Cat #406258 |
Sacituzumab govitecan (SG) |
Gilead |
N/A |
Control ADC (h679-CL2A-SN-38) |
Gilead |
N/A |
D-α-Tocopherol polyethylene glycol 1000 succinate (TPGS) |
Sigma-Aldrich |
Cat #57668 |
JH-RE-06, TLS inhibitor |
Selleckchem |
Cat # S8850 |
Olaparib |
Medchem express |
Cat # HY-10162 |
Fetal Bovine serum |
BioWest LLC |
Cat # S1480 |
|
Critical commercial assays |
|
Ssoadvanced SYBR® Green supermix |
BioRad |
Cat #1725270 |
PrimePCR™ SYBR® Green Assay: GAPDH |
BioRad |
Cat #10025636 |
iScript™ Advanced cDNA Synthesis Kit |
BioRad |
Cat #1725037 |
|
Deposited data |
|
RNAseq datasets |
Gene expression omnibus (GEO) |
GSE278664 |
|
Experimental models: Cell lines |
|
PEO1 |
Sigma-Aldrich |
#10032308 |
PEO1-olaJR |
Lab stored |
Huang et al.29
|
PEO1-olaR |
Lab stored |
Huang et al.29
|
PEO4 |
Sigma-Aldrich |
#10032309 |
OVCAR8 |
NCI-60 collection |
N/A |
PEO1-Luc |
Lab stored |
This study |
PEO1-olaR-Luc |
Benjamin Bitler lab |
Yamamoto et al.30
|
PEO1-olaJR-Luc |
Lab stored |
This study |
OVCAR3 |
American Type Culture Collection (ATCC) |
#HTB-161 |
OVCAR5 |
NCI-60 collection |
N/A |
UWB1.289 |
American Type Culture Collection (ATCC) |
#CRL-2945 |
TOV21G |
American Type Culture Collection (ATCC) |
#CRL-3577 |
SKOV3 |
NCI-60 collection |
N/A |
A2780 |
Christina Annunziata Lab |
Hernandez et al.57
|
|
Experimental models: Mice |
|
NSG mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ |
NCI inhouse |
N/A |
|
Recombinant DNA |
|
pDRGFP, HR assay |
Addgene |
Cat #26475 |
pCBASce1, HR assay |
Addgene |
Cat #26477 |
|
Software and algorithms |
|
GraphPad Prism V. 10.1.1 |
Graphpad software LLC |
https://www.graphpad.com/ |
Image Studio |
LI-COR instruments |
https://www.licor.com |
Zen Blue |
Carl-Zeiss microscopy |
https://www.zeiss.com/ |
Image-J |
National Cancer Institute. |
https://imagej.net/ij/ |
Aura image analysis software |
Spectral Instruments Imaging LLC. |
https://spectralinvivo.com/aura-imaging-software/ |
FlowJo V. 10.7.2 |
BD biosciences |
https://www.flowjo.com/ |