Table 1.
Overview of the whole-transcriptome Iso-Seq datasets
| Total | A | B | C | D | E | |
|---|---|---|---|---|---|---|
| Unique genes | 11,009 | 6227 | 7151 | 7324 | 6998 | 6374 |
| Annotated genes | 10,368(94.18%) | 6047(97.11%) | 6930(96.91%) | 7120(97.21%) | 6824(97.51%) | 6216(97.52%) |
| Novel genes | 641(5.82%) | 180(2.89%) | 221(3.09%) | 204(2.79%) | 174(2.49%) | 158(2.48%) |
| Protein-coding gene | 10,768(97.81%) | 6097(97.91%) | 7006(97.97%) | 7196(98.25%) | 6882(98.34%) | 6241(97.91%) |
| Non-protein-coding gene | 241(2.19%) | 130(2.09%) | 145(2.03%) | 128(1.75%) | 116(1.66%) | 133(2.09%) |
| Isoforms | 35,167 | 10643 | 13741 | 13511 | 13357 | 11030 |
| Genes with >1 isoform | 6668(60.57%) | 2224(20.9%) | 2983(21.71%) | 2895(21.43%) | 2843(21.28%) | 2221(20.14%) |
| Genes with ≥10 isoforms | 461(4.19%) | 35(0.33%) | 55(0.4%) | 58(0.43%) | 64(0.48%) | 46(0.42%) |
| Known transcripts (%) | 7633(21.71%) | 3494(32.83%) | 4150(30.2%) | 4301(31.83%) | 4120(30.85%) | 3517(31.89%) |
| Novel transcripts | 27,534(78.29%) | 7149(67.17%) | 9591(69.8%) | 9210(68.17%) | 9237(69.15%) | 7513(68.11%) |
A, sample A (7-d-old pigs); B, sample B (30-d-old pigs); C, sample C (60-d-old pigs); D, sample D (90-d-old pigs); E, sample E (210-d-old pigs).