Table 2.
Quality filtering. Number of input read pairs, output read pairs, output single reads forward / reverse and completely dropped read pairs.
| Species name | Sample ID | Input read pairs | Output read pairs | Output single reads forward | Output single reads reverse | Dropped read pairs |
|---|---|---|---|---|---|---|
| Agrostemma githago L. | P451_124 | 24112942 | 22725633 | 971990 | 228283 | 187036 |
| Atocion armeria (L.) Raf. | P451_102 | 11315337 | 10326278 | 720105 | 95624 | 173330 |
| Atocion rupestre (L.) Oxelman | P451_121 | 22294313 | 20787517 | 1123477 | 197484 | 185835 |
| Eudianthe laeta Rchb. ex Willk. | P451_128 | 19625259 | 18518825 | 763093 | 184848 | 158493 |
| Heliosperma macranthum Pančić | P451_115 | 14340190 | 12906795 | 1128388 | 133252 | 171755 |
| Petrocoptis crassifolia Rouy | P451_126 | 21398313 | 20034609 | 982066 | 194556 | 187082 |
| Silene acaulis (L.) L. | P451_125 | 18945308 | 17665870 | 943253 | 169017 | 167168 |
| Silene ajanensis (Regel & Tiling) Vorosch | BOX5120 | 16377073 | 14191350 | 1143281 | 304424 | 738018 |
| Silene assyriaca Hausskn. & Bornm. ex Lazkov | P451_103 | 9127467 | 8017710 | 888069 | 95346 | 126342 |
| Silene atocioides Boiss. | P451_104 | 11545292 | 10134467 | 1089149 | 118532 | 203144 |
| Silene behen L. | P451_127 | 20388695 | 19140048 | 912968 | 159650 | 176029 |
| Silene ciliata Pourr. | P451_101 | 10192980 | 9072528 | 905500 | 92001 | 122951 |
| Silene colorata Poir. | P451_105 | 11551324 | 10181680 | 1082283 | 118589 | 168772 |
| Silene commelinifolia Boiss. | P451_106 | 11462296 | 10323693 | 898319 | 109373 | 130911 |
| Silene conoidea L. | P1844_105 | 39775814 | 32271499 | 5846279 | 750065 | 907971 |
| Silene conoidea L. | P451_107F | 15780766 | 13930324 | 1421028 | 162271 | 267143 |
| Silene dichotoma Ehrh. | P451_135 | 17638547 | 16439052 | 891646 | 153865 | 153984 |
| Silene echinospermoides Hub.-Mor. | P451_111 | 10876570 | 9831870 | 829705 | 83976 | 131019 |
| Silene eriocalycina Boiss. | P451_108F | 13027577 | 11633227 | 1102455 | 113064 | 178831 |
| Silene ertekinii Aydin & Oxelman | P451_109 | 13564252 | 12070759 | 1170484 | 141247 | 181762 |
| Silene ertekinii Aydin & Oxelman | P451_110 | 12400320 | 11192693 | 968714 | 107496 | 131417 |
| Silene exsudans Boiss. & Heldr. | P451_129 | 17433016 | 16240847 | 835407 | 192966 | 163796 |
| Silene flos-cuculi L. | P451_112 | 14825777 | 13247534 | 1190136 | 173151 | 214956 |
| Silene fraudatrix Meikle | P451_113 | 14586134 | 12674162 | 1522763 | 179032 | 210177 |
| Silene involucrata (Cham. & Schltdl.) Bocquet | BOX4909 | 15772276 | 13868507 | 730994 | 789550 | 383225 |
| Silene involucrata (Cham. & Schltdl.) Bocquet subsp. furcata (Raf.) V.V.Petrovsky & Elven | BOX4906 | 17691017 | 15626558 | 1296233 | 326189 | 442037 |
| Silene involucrata (Cham. & Schltdl.) Bocquet subsp. involucrata | BOX5115 | 16174005 | 13912120 | 1115081 | 284340 | 862464 |
| Silene involucrata (Cham. & Schltdl.) Bocquet subsp. furcata (Raf.) V.V.Petrovsky & Elven | BOX4907 | 15515562 | 13447355 | 840011 | 798114 | 430082 |
| Silene involucrata (Cham. & Schltdl.) Bocquet subsp. tenella (Tolmatchew) Bocquet | BOX4908 | 16387696 | 13870928 | 1174916 | 280392 | 1061460 |
| Silene laxa Boiss. & Kotschy | P451_114 | 11985993 | 10666366 | 986347 | 156048 | 177232 |
| Silene linneana Voroschilov | BOX4911 | 14998150 | 13181484 | 689295 | 776694 | 350677 |
| Silene muscipula L. | P451_136 | 32821341 | 30821716 | 1396750 | 356917 | 245958 |
| Silene noctiflora L. | P451_117 | 15592092 | 14084073 | 1201144 | 133331 | 173544 |
| Silene nutans L. | P451_118 | 13748725 | 12302911 | 1149086 | 126603 | 170125 |
| Silene odontopetala Fenzl | P451_119 | 25678045 | 23663427 | 1481241 | 285179 | 248198 |
| Silene sachalinensis F. Schmidt | BOX5117 | 17844665 | 12638566 | 1273424 | 280157 | 3652518 |
| Silene sedoides Poir. | P451_122 | 19797649 | 18430258 | 998932 | 179618 | 188841 |
| Silene soczaviana Schischk. | BOX4885 | 14069842 | 12067058 | 662427 | 712226 | 628131 |
| Silene vittata Stapf | P451_123 | 18034049 | 16740902 | 950112 | 162301 | 180734 |
| Viscaria vulgaris Bernh. | P1844_106 | 34880003 | 28208434 | 4869669 | 915263 | 886637 |