Figure 19.

Bacterial diversity metrics estimated for the fecal samples

(A) Species diversity estimated as Chao1 index, samples grouped by enterotypes.

(B) Species diversity estimated as Chao1 index, samples grouped by resistotypes.

(C) Number of genera observed, samples grouped by entrotypes.

(D) Number of genera observed, samples grouped by resistotypes It can be seen that resistotype RT1 is associated with higher bacterial diversity, meanwhile resistotype RT2 is associated with lower bacterial diversity Also see Figure S10 for bacterial diversity metrics estimated for the oropharyngeal samples.