Table 2.
C.C | Cyclooxygenase-1 (PDB ID: 1EQH) |
Binding affinity | RMSD | Cyclooxygenase-2 (PDB ID: 4COX) |
Binding affinity | RMSD |
---|---|---|---|---|---|---|
Amino acid residues are implicated | Amino acid residues are implicated | |||||
5a | His207, Phe210,Thr212, His386,Val451 | −7 | 47.654 | Cys41, Tyr130, Leu152, Pro153, Arg469 | −8.1 | 40.842 |
5b | Ile124, Lys532, Pro542 | −7.6 | 2.569 | Arg120,Val349,Phe381,Leu384,Tyr385,Trp387, Met522, Ala527 | −8.7 | 2.174 |
5c | Phe142, Arg376, Arg374, Asn375 | −7.2 | 34.832 | Asn39,Cys41, Ala151, Leu152,Pro153, Gln461, Arg469 | −8.5 | 41.132 |
5d | Val116, Arg120, Leu352, Tyr355, Gly526, Ala527, Leu531 | −7.4 | 23.631 |
Arg120,Val349, Leu352,Tyr385, Ala527, Leu531 |
−8.4 | 22.256 |
5e | Phe142, Ser143,Val145, Arg374, Arg376, Arg374 | −7.9 | 2.882 | Arg44, Cys47, Leu152, Lys546 | −8.3 | 2.521 |
5f | Ile46, Leu152, Pro153, Glu465, Lys468, Arg469 | −8.7 | 5.873 | Leu145,Val 228, Tyr373, Asn375, Asn537 | −8.1 | 4.008 |
5g | Gln44, Ile46, Pro153,Glu465, Lys468, Arg469 | −8.4 | 2.371 | Cys41, Cys47, Tyr130, Leu152, Pro153, Arg469 | −8.2 | 2.094 |
5h | Val116, Leu352, Ala527 | −7.8 | 26.574 | Cys47, Leu152, Pro153 | −8 | 2.216 |
5i | Thr206, His207, His386, His388, Met391,Val447 | −7.8 | 27.057 | Cys41, Cys47, Tyr130, Leu152, Pro153, Arg469 | −8.1 | 15.159 |
5j | Phe142,Val145, Arg374, Arg376, Pro538 | −7.4 | 3.655 | Val349, Leu352, Leu531, Ala 527 | −8.2 | 25.085 |
5k | Ile46,Tyr130, Leu152,Gln461 | −8 | 1.799 | Ser121, Tyr 122, Ser126, Gln372, Lys532 | −7.8 | 1.746 |
5l | Phe142, Ser143,Val145, Arg374, Asn375 | −7.6 | 15.805 | Asn39, Cys41, Leu152, Pro153, Lys468,Arg469 | −8.1 | 45.125 |
5m | His207, His386, His388 | −8 | 26.334 | Ser121, Tyr 122, Ser126, Leu366, Phe367, Gln370 | −8.0 | 28.242 |
Diclofenac sodium | Ile46,Cys47,Pro153,Pro156,Trp323,Gln327 | −7.3 | 32.019 | Trp323,Gln327,Cys47, Met48,Ser49, Pro153 | −7.9 | 2.386 |
C.C- Compound Code, In Bold: H- bonding interaction, RMSD- Root Mean Square Deviation.