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. 2024 Nov 15;10(22):e40300. doi: 10.1016/j.heliyon.2024.e40300

Table 2.

Results of molecular docking studies of compounds (5a-5m) and Diclofenac sodium into COX-1/COX-2.

C.C Cyclooxygenase-1 (PDB ID: 1EQH)
Binding affinity RMSD Cyclooxygenase-2 (PDB ID: 4COX)
Binding affinity RMSD
Amino acid residues are implicated Amino acid residues are implicated
5a His207, Phe210,Thr212, His386,Val451 −7 47.654 Cys41, Tyr130, Leu152, Pro153, Arg469 −8.1 40.842
5b Ile124, Lys532, Pro542 −7.6 2.569 Arg120,Val349,Phe381,Leu384,Tyr385,Trp387, Met522, Ala527 −8.7 2.174
5c Phe142, Arg376, Arg374, Asn375 −7.2 34.832 Asn39,Cys41, Ala151, Leu152,Pro153, Gln461, Arg469 −8.5 41.132
5d Val116, Arg120, Leu352, Tyr355, Gly526, Ala527, Leu531 −7.4 23.631 Arg120,Val349, Leu352,Tyr385, Ala527,
Leu531
−8.4 22.256
5e Phe142, Ser143,Val145, Arg374, Arg376, Arg374 −7.9 2.882 Arg44, Cys47, Leu152, Lys546 −8.3 2.521
5f Ile46, Leu152, Pro153, Glu465, Lys468, Arg469 −8.7 5.873 Leu145,Val 228, Tyr373, Asn375, Asn537 −8.1 4.008
5g Gln44, Ile46, Pro153,Glu465, Lys468, Arg469 −8.4 2.371 Cys41, Cys47, Tyr130, Leu152, Pro153, Arg469 −8.2 2.094
5h Val116, Leu352, Ala527 −7.8 26.574 Cys47, Leu152, Pro153 −8 2.216
5i Thr206, His207, His386, His388, Met391,Val447 −7.8 27.057 Cys41, Cys47, Tyr130, Leu152, Pro153, Arg469 −8.1 15.159
5j Phe142,Val145, Arg374, Arg376, Pro538 −7.4 3.655 Val349, Leu352, Leu531, Ala 527 −8.2 25.085
5k Ile46,Tyr130, Leu152,Gln461 −8 1.799 Ser121, Tyr 122, Ser126, Gln372, Lys532 −7.8 1.746
5l Phe142, Ser143,Val145, Arg374, Asn375 −7.6 15.805 Asn39, Cys41, Leu152, Pro153, Lys468,Arg469 −8.1 45.125
5m His207, His386, His388 −8 26.334 Ser121, Tyr 122, Ser126, Leu366, Phe367, Gln370 −8.0 28.242
Diclofenac sodium Ile46,Cys47,Pro153,Pro156,Trp323,Gln327 −7.3 32.019 Trp323,Gln327,Cys47, Met48,Ser49, Pro153 −7.9 2.386

C.C- Compound Code, In Bold: H- bonding interaction, RMSD- Root Mean Square Deviation.