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. 2024 Nov 21;18(11):e0012122. doi: 10.1371/journal.pntd.0012122

Table 1. Primers, probes and gene targets for the detection of Bacillus anthracis from bacterial isolates cultured from blood smear samples from wildlife mortalities in Kruger National Park, South Africa by quantitative polymerase chain reaction (qPCR) assays.

Bacillus anthracis protective antigen (BAPA), lethal factor (lef), chromosomal marker (Ba-1 and Genomic island 4: GI4) and the capsule region (capB) were used as molecular markers in this study. FRET stands for fluorescence resonance energy transfer.

Primer/Probe (5′–3′) Chemistry Target Reference
Forward ‐ GTACATCTTCTAGCTGTTGCAA
Reverse–ACGTAGGAAGACCGTTGATTA
Probe ‐ VIC-CGTTGTTGTGTATTTG-MGB
TaqMan Ba-1 [41]
Forward–TAAGCCTGCGTTCTTCGTAAATG
Reverse–GTTCCCAAATACGTAATGTTGATGAG
Probe ‐ NED-TTGCAGCGAATGAT-MGB
TaqMan capB
Forward–CACTATCAACACTGGAGCGATTCT
Reverse–AATTATGTCATCTTTCTTTGGCTCAA
Probe ‐ Cy5-AGCTGCAGATTCC-MGB
TaqMan lef
Forward ‐ GGAGATATTAACAAGAGATGGATTGGA
Reverse ‐ CAGTAGGCTTGTCTGCTCTAATAAAATT
Probe ‐ FAM-ACATGCCAGCGTTTTTTGCCTCTACACA-BHQ1
Taqman GI4
Forward–CGGATCAAGTATATGGGAATATAGCAA
Reverse ‐ CCGGTTT AGTCGTTT CTAATGGAT
BAPA-FL ‐ TGCGGTAACACTT CACTCCAGTTCGA-X
BAPA-LCRed 640 - CCTGTATCCACCCTCACTCTT CCATTTT C-P
FRET pagA with BAPA probe [3]