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. 2024 Nov 22;13:101825. doi: 10.1016/j.toxrep.2024.101825

Table 3.

Predicted medicinal chemistry and drug-likeness properties of studied antiretroviral drugs and harpagide 5-O-β-D-glucopyranoside.

Properties Dolutegravir Lamivudine Tenofovir-disoproxil fumarate Lenacapavir Harpagide 5-O-β-D-glucopyranoside Inference / Reference Range
Predicted Scores/Comment
QED 0.782 0.621 0.224 0.112 0.155 > 0.67 (Attractive) 0.49–0.67 (unattractive) < 0.34 (too complex)
SAscore 3.622 4.401 4.198 5.609 5.454 ≥6 difficult, <6,
easy
Fsp3 0.35 0.5 0.632 0.385 0.905 ≥0.42 suitable
MCE−18 84.259 38.5 36 185.741 86.8 ≥45 suitable
NPscore −0.925 1.245 −0.195 −0.773 2.103 −5–5
Lipinkis Rule Accepted Accepted Rejected Rejected Rejected MW ≤500; logP ≤5; Hacc ≤10; Hdon ≤5
Pfizer Rule Accepted Accepted Accepted Accepted Accepted logP > 3; TPSA < 75
GSK Rule Rejected Accepted Rejected Rejected Rejected MW ≥400; logP ≥4
Golden triangle Accepted Accepted Rejected Rejected Rejected 200 ≤MW ≤50; −2 ≤logD ≤5
PAINS 0 alerts 0 alerts 0 alerts 0 alerts 0 alerts Pan Assay Interference Compounds
ALARM NMR rule 0 alerts 2 alerts (A&B) 0 alerts 2 alerts (D&E) 0 alerts Thiol reactive compounds.
BMS Rule 0 alerts 0 alerts 1 alerts (C) 0 alerts 1 alerts (F) Undesirable and reactive compounds
Chelator Rule 0 alerts 0 alerts 0 alerts 0 alerts 0 alerts Chelating compounds

QED = Quantitative Estimate of Druglikeness, Fsp3 = number of sp3 hybridized carbons / total carbon count, PAINS = Pan Assay Interference Compounds SAscore = Synthetic accessibility score, MCE = medicinal chemistry evolution, NPscore = Natural product-likeness score.