Table 3.
Predicted medicinal chemistry and drug-likeness properties of studied antiretroviral drugs and harpagide 5-O-β-D-glucopyranoside.
| Properties | Dolutegravir | Lamivudine | Tenofovir-disoproxil fumarate | Lenacapavir | Harpagide 5-O-β-D-glucopyranoside | Inference / Reference Range |
|---|---|---|---|---|---|---|
| Predicted Scores/Comment | ||||||
| QED | 0.782 | 0.621 | 0.224 | 0.112 | 0.155 | > 0.67 (Attractive) 0.49–0.67 (unattractive) < 0.34 (too complex) |
| SAscore | 3.622 | 4.401 | 4.198 | 5.609 | 5.454 |
≥6 difficult, <6, easy |
| Fsp3 | 0.35 | 0.5 | 0.632 | 0.385 | 0.905 | ≥0.42 suitable |
| MCE−18 | 84.259 | 38.5 | 36 | 185.741 | 86.8 | ≥45 suitable |
| NPscore | −0.925 | 1.245 | −0.195 | −0.773 | 2.103 | −5–5 |
| Lipinkis Rule | Accepted | Accepted | Rejected | Rejected | Rejected | MW ≤500; logP ≤5; Hacc ≤10; Hdon ≤5 |
| Pfizer Rule | Accepted | Accepted | Accepted | Accepted | Accepted | logP > 3; TPSA < 75 |
| GSK Rule | Rejected | Accepted | Rejected | Rejected | Rejected | MW ≥400; logP ≥4 |
| Golden triangle | Accepted | Accepted | Rejected | Rejected | Rejected | 200 ≤MW ≤50; −2 ≤logD ≤5 |
| PAINS | 0 alerts | 0 alerts | 0 alerts | 0 alerts | 0 alerts | Pan Assay Interference Compounds |
| ALARM NMR rule | 0 alerts | 2 alerts (A&B) | 0 alerts | 2 alerts (D&E) | 0 alerts | Thiol reactive compounds. |
| BMS Rule | 0 alerts | 0 alerts | 1 alerts (C) | 0 alerts | 1 alerts (F) | Undesirable and reactive compounds |
| Chelator Rule | 0 alerts | 0 alerts | 0 alerts | 0 alerts | 0 alerts | Chelating compounds |
QED = Quantitative Estimate of Druglikeness, Fsp3 = number of sp3 hybridized carbons / total carbon count, PAINS = Pan Assay Interference Compounds SAscore = Synthetic accessibility score, MCE = medicinal chemistry evolution, NPscore = Natural product-likeness score.