Table 2.
Stable complete responder/non-CR taxa definition
| Group | Longitudinal overlap |
List of taxa | ||
|---|---|---|---|---|
| 0 month | 2–6 months | 7–13 months | ||
| core CR (n = 25) | x | x | x | Evtepia gabavorous SGB15120 |
| Clostridium SGB6179 | ||||
| Anaerostipes caccae SGB4529 | ||||
| Bacteroides nordii SGB1858 | ||||
| Clostridiales bacterium Choco116 SGB15149 | ||||
| Clostridiales bacterium BX7 SGB72833 | ||||
| Clostridia unclassified SGB14951 | ||||
| Candidatus Metaruminococcus gallistercoris SGB14870 | ||||
| Candidatus Cryptoclostridium obscurum SGB61016 | ||||
| Bifidobacterium pseudolongum SGB17279 | ||||
| Veillonellaceae SGB5809 group | ||||
| Clostridia unclassified SGB6369 | ||||
| Clostridia unclassified SGB14016 | ||||
| Clostridia unclassified SGB6293 | ||||
| Eubacterium maltosivorans SGB4078 | ||||
| Carnobacterium maltaromaticum SGB7902 | ||||
| Candidatus Metalachnospira gallinarum SGB5181 | ||||
| Candidatus Roslinia caecavium SGB4165 | ||||
| Candidatus Gallimonas caecicola SGB14041 | ||||
| Candidatus Heteroscilispira lomanii SGB63278 | ||||
| Bifidobacterium pullorum SGB17264 | ||||
| Firmicutes SGB47515 | ||||
| Bacteroidales unclassified SGB2173 | ||||
| Aggregatibacter sp oral taxon 458 SGB9733 | ||||
| Clostridiales bacterium S5_A14a SGB3977 | ||||
| core nCR (n = 7) | x | x | x | Alistipes sp AF17_16 SGB2326 |
| Clostridiaceae bacterium NSJ_31 SGB14839 | ||||
| – | x | x | Blautia schinkii SGB4825 | |
| Candidatus Saccharibacteria unclassified SGB19893 | ||||
| Bacteroidaceae SGB1808 | ||||
| Bacteroides sp Marseille P3684 SGB1429 | ||||
| Alistipes sp An66 SGB2306 | ||||
Stable CR is defined as prevalent taxa in CR (>80% of samples) across 0, 2–6, and 7–13 months of therapy; stable nCR is defined as prevalent taxa in nCR across at least two time points.