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. 2024 Dec 4;6(4):lqae166. doi: 10.1093/nargab/lqae166

Table 3.

Evaluated hyperparameters for the experimental setup

Hyperparameter Evaluated Values
Number of Principal Components {32, 64, 128}
MLP Hidden Layers {2, 3}
MLP Hidden Layer Size {16, 32, 64}
Autoencoder Hidden Layers {2, 3}
Autoencoder Hidden Layer Size {16, 32, 64}
Masked autoencoder (37) {Yes, No}
OC-SVM Kernel {Linear, Radial Basis Function}
Number of Nearest Neighbors (N) {10, 20, 50}
Final Refinement Neighbors {10, 20}
kNN Graph Neighbors {20, 50, 100}

The best hyperparameters, shown in bold, were chosen using cross validation on the known classes (whose labels are available) as described in (36).