| Package (version) | Repository | Source or reference |
|---|---|---|
| TCGABiolinks 2.24.3 | Bioconductor | https://bioconductor.org/packages/TCGAbiolinks/; Colaprico et al., 2008 |
| edgeR 3.38.0 | Bioconductor | https://bioconductor.org/packages/edgeR/; Chen et al., 2016 |
| GSVA 1.44.0 | Bioconductor | https://bioconductor.org/packages/GSVA/; Castelo et al., 2004 |
| Survival 3.3-1 | CRAN | https://cran.r-project.org/package=survival; Therneau et al., 2022 |
| Survminer 0.4.9 | CRAN | https://cran.r-project.org/package=survminer; Kassambara et al., 2021 |
| Ezcox 1.0.2 | CRAN | https://cran.r-project.org/package=ezcox ; Wang, 2021 |
| Seurat 4.3.0 | CRAN | https://cran.r-project.org/package=Seurat; Butler et al., 2022 |
| CellChat 1.6.1 | GitHub | https://github.com/sqjin/CellChat; Jin, 2023 |
| Tidyverse 2.0.0 | CRAN | https://cran.r-project.org/package=tidyverse; Wickham, 2023 |
Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.