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. 2024 Oct 10;228(4):iyae159. doi: 10.1093/genetics/iyae159

Table 1.

The effect of inbreeding on fruit yield and quality traits within the California population.

Trait y¯S0 y¯S1 Contrast Pr>F Change (%)
Heterozygosity (H) 0.356 0.192 0.164 <0.0001 46.1
Yield (g/plant) 727.6 369.6 358.0 <0.0001 49.2
Count (fruit) 24.5 16.4 8.2 <0.0001 33.1
Weight (g/fruit) 29.7 22.8 6.9 <0.0001 23.2
Firmness (kg-Force) 0.81 0.86 0.05 0.32 6.2
TSS (%) 8.9 10.2 1.3 <0.0001 14.6
TA (%) 0.75 0.81 0.06 0.01 8.0
TSS/TA 11.9 12.7 0.8 0.08 6.7
ANC (μg/mL) 104.2 111.5 7.3 0.29 7.0

Contrasts (y¯S0y¯S1) were estimated between the phenotypic means of nine elite parents (S0 individuals) and 31 of their self-pollinated (S1) offspring for fruit yield, count, weight, firmness, TSS, TA, and ANC, where y¯S0 is the EMM of the nine parents and y¯S1 is the EMM of the 31 S1 offspring. EMMs were estimated from phenotypes observed across clonal replicates, harvests, and years in Salinas, California field experiments in 2017–2018 and 2018–2019. The percent change was estimated by (y¯S0y¯S1)/y¯S0×100.