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Heatmap of frequency of TEs and PCGs across the Anastrepha ludens genome assembly. The frequencies of the TE classes and PCGs were calculated in windows of 500 kb. TEs class I are composed of LTRs (Copia, Gypsy, and unclassified LTRs) and non-LTRs (DIRS, LINE and unclassified non-LTR elements). TEs class II are composed of DNA transposons, TIR (CACTA, Mutator, PIF Harbinger, Tc1 Mariner, hAT, and Polinton), and non-TIR element Helitron.
