TABLE 3.
Acquired antimicrobial resistance genes in nontyphoidal Salmonellaa
| Antimicrobial class | Resistance genes |
|---|---|
| Rifampicin | arr-2, arr-3 |
| Fluoroquinolone | qnrA1, qnrA2, qnrB1, qnrB11, qnrB12, qnrB17, qnrB19, qnrB2, qnrB25, qnrB26, qnrB3, qnrB32, qnrB34, qnrB35, qnrB37, qnrB38, qnrB4, qnrB40, qnrB4, qnrB47, qnrB48, qnrB51, qnrB6, qnrB69, qnrB7, qnrB9, qnrD, qnrS1, qnrS2, qnrS3, qnrS4, qnrVC4, aac(6′)Ib-cr, norA, oqxA, oqxB, qepA |
| Aminoglycoside | aac(2′)-Ia, aac(2′)-Ib, aac(2′)-Ic, aac(3)-IIa, aac(3)-IId, aac(3)-IIe, aac(3)-IVa, aac(3)-Ia, aac(3)-Id, aac(3)-Ik, aac(3)-VIa, aac(6′)-33, aac(6′)-IIa, aac(6′)-IIc, aac(6′)-Ib, aac(6′)-Ic, aac(6′)-If, aac(6′)-Ii, aac(6′)-Im, aac(6′)-Iz, aac(6′)-aph(2″), aacA4, aadA1, aadA10, aadA11, aadA12, aadA13, aadA14, aadA15, aadA16, aadA17, aadA2, aadA22, aadA23, aadA24, aadA3, aadA4, aadA5, aadA6, aadA7, aadA8, aadA8b, aadB, aadD, ant(6)-Ia, aph(2″)-Ib, aph(3′)-III, aph(3′)-IIa, aph(3′)-IIb, aph(3′)-IIc, aph(3′)-Ia, aph(3′)-Ic, aph(3′)-Id, aph(3′)-VIa, aph(4)-Ia, aph(6)-Ic, armA, rmtB, rmtE, spc, sph, strA, strB |
| Beta-lactam (bla genes) | ACT-4, ACT-5, ACT-6, ACT-7, CARB-1, CARB-2, CARB-3, CARB-5, CARB-6, CEPH-A, CKO-1, CMG, CMY-15, CMY-16, CMY-17, CMY-18, CMY-2, CMY- 20, CMY-22, CMY-23, CMY-24, CMY-3, CMY-30, CMY-32, CMY-33, CMY-36, CMY-4, CMY-41, CMY-42, CMY-44, CMY-46, CMY-47, CMY-48, CMY-5, CMY-53, CMY-54, CMY-56, CMY-58, CMY-59, CMY-6, CMY-61, CMY-64, CMY-68 ,CMY-70, CMY-83, CMY-87, CMY-98, CTX-M-1, CTX-M-11, CTX-M-14, CTX-M-14b, CTX-M-15, CTX-M-2, CTX-M-24, CTX-M-27, CTX-M-3, CTX-M-5, CTX-M-55, CTX-M-65, CTX-M-8, CTX-M-9, DHA-1, DHA-2, DHA- 3, DHA-5, HERA-3, HERA-5, HERA-6, KPC-2, LEN1, LEN11, LEN9, MAL-1, MIR-3, MIR-5, MOR-1, MOR-2, NDM-1, OKP-B-12, OXA-1, OXA-10, OXA- 114, OXA-129, OXA-134, OXA-17, OXA-2, OXA-21, OXA-23, OXA-27, OXA-278, OXA-335, OXA-34, OXA-36, OXA-4, OXA-48, OXA-50, OXA-58, OXA-61, OXA-66, OXA-9, OXA-90, OXY-1-4, OXY-1-5, OXY-2, OXY-2-7, OXY-2-8, OXY-5-1, OXY-6, OXY-6-1, OXY-6-2, PAO, PER-2, SED1, SHV-1, SHV-100, SHV-105, SHV-11, SHV-12, SHV-122, SHV-129, SHV-2, SHV-25, SHV-28, SHV-39, SHV-45, SHV-99, TEM-1, TEM-10, TEM-104, TEM-105, TEM-106, TEM-116, TEM-12 ,TEM-123, TEM-124, TEM-126, TEM-127, TEM-135, TEM- 141 ,TEM-143, TEM-144, TEM-148, TEM-154, TEM-155, TEM-156, TEM-157, TEM-159, TEM-162, TEM-166, TEM-169, TEM-171, TEM-176, TEM-183, TEM-199, TEM-1A, TEM-1B, TEM-1C, TEM-1D, TEM-2 ,TEM-205, TEM-213, TEM-22, TEM-30, TEM-33, TEM-42, TEM-52, TEM-52B, TEM-57, TEM-59, TEM-63, TEM-67, TEM-7, TEM-70, TEM-76, TEM-79, TEM-90, TEM-95, VEB- 5, VIM-1, Z, ZEG-1 |
| Beta-lactam (other) | cepA-29, cfxA, cfxA3, cphA1, mecA, hugA |
| Phenicol | cat(pC221), catA1, catA2, catA3, catB2, catB3, catB7, catQ, cml, cmlA1, fexA, floR |
| Trimethoprim | dfrA10, dfrA12, dfrA14, dfrA15, dfrA16, dfrA17, dfrA18, dfrA21, dfrA23, dfrA24, dfrA25, dfrA27, dfrA29, dfrA31, dfrA32, dfrA5, dfrA7, dfrA8, dfrB1, dfrB3, dfrB5, dfrG |
| Macrolides/lincosamides | ere(A), erm(42), erm(A), erm(B), erm(C), erm(D), erm(F), erm(G), lnu(A), lnu(C), lnu(F), lsa(A), mef(A), mef(B), mph(A), mph(B), mph(C), mph(E), msr(A), msr(C), msr(D), msr(E), vga(A) |
| Polymyxin | mcr-1 |
| Sulfonamide | sul1, sul2, sul3 |
| Tetracycline | tet(32), tet(38), tet(39), tet(41), tet(A), tet(B), tet(C), tet(D), tet(E), tet(G), tet(H), tet(J), tet(K), tet(L), tet(M), tet(O), tet(P), tet(Q), tet(W), tet(X) |
| Fosfomycin | fosA |
| Fusidic acid | fusA, fusB3 |
a
NCBI last accessed 4 March 2017. Total number of genomes, N = 81,936: U.S., n = 38,725; non-U.S., n = 27,095; unknown origin, n = 16,116.