TABLE 6.
Enterococcus isolates with animal source from the Genbank database included in the plasmid rep genes in silico screening
| Species | Isolate | MLST | Plasmid rep | Isolation source | Year | Isolation country | Assembly accession |
|---|---|---|---|---|---|---|---|
| Enterococcus faecalis | PF3 | 0 | Adélie penguin (Pygoscelis adeliae) | 2010 | Antarctica | GCA_000505585.1 | |
| DBH18 | 1 | Mallard duck (Anas platyrhynchos) | 2005 | Spain | GCF_001563075.1 | ||
| ATCC 27959 | 40 | 0 | Cattle | 1975 | United States | GCA_000395265.1 | |
| ATCC 35038 | 59 | 2 | Chicken (Gallus gallus) | 1980 | GCA_000392955.1 | ||
| ATCC 29212 | 0 | Chicken (Gallus gallus) | GCA_900117325.1 | ||||
| ATCC 29212 | 2 | Chicken (Gallus gallus) | GCA_900117335.1 | ||||
| F1 | 72 | 2 | Cow | 1900 | GCA_000393095.1 | ||
| ATCC 6055 | 113 | 2 | Cow | 1937 | GCA_000393375.1 | ||
| ARO1/DG | 108 | 3 | Dog (Canis lupus familiaris) | GCA_000157275.1 | |||
| UCD-PD3 | 1 | Felis catus | 2015 | United States | GCF_001692955.1 | ||
| Fly1 | 101 | 0 | Fruit fly (Drosophila) | United States | GCA_000157415.1 | ||
| Fly 2 | 102 | 1 | Fruit fly (Drosophila) | 2005 | GCA_000393215.1 | ||
| P9-1 | 2 | Magellanic penguin (Spheniscus magellanicus) | 2013 | Brazil | GCF_001400065.1 | ||
| P8-1 | 3 | Magellanic penguin, (Spheniscus magellanicus) | 2013 | Brazil | GCF_001400055.1 | ||
| KB1 | 1 | Mus musculus | 2011 | Germany | GCA_002221625.2 | ||
| KB1 | 0 | Mus musculus | 2015 | Switzerland | GCF_001689055.1 | ||
| 7330257-1 | 16 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390805.1 | |
| 7330259-5 | 16 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390825.1 | |
| 7330948-5 | 16 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390845.1 | |
| 7330112-3 | 16 | 6 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390765.1 | |
| 7430416-3 | 16 | 0 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000390905.1 | |
| 19116 | 16 | 1 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000390685.1 | |
| 7430275-3 | 16 | 1 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000390865.1 | |
| 7430821-4 | 16 | 1 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000390925.1 | |
| D6 | 16 | 0 | Pig (Sus scrofa) | Denmark | GCA_000157455.1 | ||
| 7430315-3 | 35 | 3 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000390885.1 | |
| D1 | 40 | 0 | Pig (Sus scrofa) | GCA_000393575.1 | |||
| 7330082-2 | 40 | 0 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390745.1 | |
| D32 | 40 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000281195.1 | |
| D3 | 47 | 2 | Pig (Sus scrofa) | GCA_000392915.1 | |||
| 7330245-2 | 47 | 2 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000390785.1 | |
| L9 | 0 | Pig (Sus scrofa) | 2013 | Brazil | GCF_001878735.1 | ||
| L12 | 0 | Pig (Sus scrofa) | 2013 | Brazil | GCF_001886675.1 | ||
| IBUN9046YE | 5 | Pig (Sus scrofa) | 2014 | Colombia | GCA_002250145.1 | ||
| 19 | 1 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788165.1 | ||
| 17 | 1 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788185.1 | ||
| 1 | 2 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788175.1 | ||
| 32 | 2 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788255.1 | ||
| 12 | 3 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788155.1 | ||
| 18 | 3 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000788235.1 | ||
| Enfs51 | 2 | Pig (Sus scrofa) | 2012 | Malaysia | GCF_001806515.1 | ||
| P.En250 | 3 | Pig (Sus scrofa) | 2012 | Malaysia | GCF_002009545.1 | ||
| P. En090 | 3 | Pig (Sus scrofa) | 2012 | Malaysia | GCF_002009565.1 | ||
| Enfs85 | 5 | Pig (Sus scrofa) | 2012 | Malaysia | GCF_002009465.1 | ||
| XJ05 | 1 | Sheep (Ovis aries) | 2002 | China | GCF_001263775.1 | ||
| OG1X | 92 | 1 | Tunicate (Lissoclinum patella) | 2006 | Solomon Islands | GCA_000320305.1 | |
| 2924 | 116 | 1 | Turkey meat | 2005 | Denmark | GCA_000390725.1 | |
| Enterococcus faecium | E1573 | 21 | 1 | Bison (Bison sp.) | 1994 | Belgium | GCA_000321765.1 |
| 825 | 4 | Cattle | 2004 | United States | GCA_002360185.1 | ||
| E0045 | 9 | 3 | Chicken (Gallus gallus) | 1992 | United Kingdom | GCA_000321465.1 | |
| E2134 | 12 | 6 | Chicken (Gallus gallus) | 2004 | Netherlands | GCA_000322185.1 | |
| VAN 342 | 22 | 6 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395785.1 | |
| VAN 332 | 38 | 4 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395745.1 | |
| VAN 345 | 38 | 5 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395805.1 | |
| E1575 | 158 | 4 | Chicken (Gallus gallus) | 1995 | Belgium | GCA_000321805.1 | |
| F9730129-1 | 245 | 4 | Chicken (Gallus gallus) | 1997 | Denmark | GCA_000395965.1 | |
| VAN 335 | 417 | 4 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395765.1 | |
| VAN 219 | 784 | 3 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395705.1 | |
| VAN 222 | 784 | 3 | Chicken (Gallus gallus) | 2010 | Denmark | GCA_000395725.1 | |
| 7527 | 3 | Chicken (Gallus gallus) | 2003 | United States | GCA_002360135.1 | ||
| 6605 | 4 | Chicken (Gallus gallus) | 2003 | United States | GCA_002360225.1 | ||
| 5209 | 6 | Chicken (Gallus gallus) | 2003 | United States | GCA_002360255.1 | ||
| E1574 | 27 | 3 | Dog (Canis lupus familiaris) | 1995 | Belgium | GCA_000321785.1 | |
| E4389 | 78 | 5 | Dog (Canis lupus familiaris) | Denmark | GCA_000322425.1 | ||
| E4453 | 192 | 5 | Dog (Canis lupus familiaris) | GCA_000239095.2 | |||
| E4452 | 266 | 5 | Dog (Canis lupus familiaris) | 2008 | Netherlands | GCA_000239115.2 | |
| GL3 | 0 | Dromedary | 2013 | Algeria | GCF_001277795.1 | ||
| ICIS 96 | 5 | Equus caballus | 2014 | Russia | GCA_002265255.1 | ||
| LS170308 | 2 | Moschus berezovskii | 2017 | China | GCA_002831505.1 | ||
| E1622 | 104 | 0 | Mouse | 1959 | Netherlands | GCA_000321945.1 | |
| E1576 | 159 | 3 | Ostrich (Struthio camelus) | 2001 | South Africa | GCA_000321825.1 | |
| E0688 | 5 | 4 | Pig (Sus scrofa) | Spain | GCA_000321605.1 | ||
| HF50104 | 5 | 2 | Pig (Sus scrofa) | 2008 | United States | GCA_000396685.1 | |
| HF50215 | 5 | 4 | Pig (Sus scrofa) | 2008 | United States | GCA_000396785.1 | |
| A17 Sv1 | 6 | 1 | Pig (Sus scrofa) | 1995 | Denmark | GCA_000392125.1 | |
| E8sv3 | 6 | 1 | Pig (Sus scrofa) | 1995 | Denmark | GCA_000392145.1 | |
| 9730219-1 | 6 | 1 | Pig (Sus scrofa) | 1997 | Denmark | GCA_000391945.1 | |
| 9730357-1 | 6 | 1 | Pig (Sus scrofa) | 1997 | Denmark | GCA_000391965.1 | |
| 9731352-4 | 6 | 2 | Pig (Sus scrofa) | 1997 | Denmark | GCA_000392005.1 | |
| 9830091-5 | 6 | 1 | Pig (Sus scrofa) | 1998 | Denmark | GCA_000392025.1 | |
| 9830512-2 | 6 | 1 | Pig (Sus scrofa) | 1998 | Denmark | GCA_000392045.1 | |
| 9931110-4 | 6 | 3 | Pig (Sus scrofa) | 1999 | Denmark | GCA_000392105.1 | |
| 7330446-2 | 6 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000391825.1 | |
| 7330519-3 | 6 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000391845.1 | |
| 7330884-2 | 6 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000391885.1 | |
| 7430166-3 | 6 | 1 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000391905.1 | |
| S658-3 | 6 | 1 | Pig (Sus scrofa) | 2002 | Denmark | GCA_000395425.1 | |
| HF50204 | 6 | 1 | Pig (Sus scrofa) | 2008 | United States | GCA_000396765.1 | |
| HF50105 | 6 | 3 | Pig (Sus scrofa) | 2008 | United States | GCA_000396705.1 | |
| HF50106 | 6 | 3 | Pig (Sus scrofa) | 2008 | United States | GCA_000396725.1 | |
| 9731349-1 | 82 | 4 | Pig (Sus scrofa) | 1997 | Denmark | GCA_000391985.1 | |
| 9930238-2 | 133 | 1 | Pig (Sus scrofa) | 1999 | Denmark | GCA_000392085.1 | |
| 7330381-1 | 133 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000391805.1 | |
| E0679 | 150 | 2 | Pig (Sus scrofa) | Belgium | GCA_000321565.1 | ||
| E0680 | 151 | 3 | Pig (Sus scrofa) | Germany | GCA_000321585.1 | ||
| E1578 | 160 | 1 | Pig (Sus scrofa) | 2001 | Germany | GCA_000321845.1 | |
| 9830565-4 | 185 | 1 | Pig (Sus scrofa) | 1998 | Denmark | GCA_000392065.1 | |
| 7330614-1 | 185 | 1 | Pig (Sus scrofa) | 2001 | Denmark | GCA_000391865.1 | |
| HF50203 | 185 | 1 | Pig (Sus scrofa) | 2008 | United States | GCA_000396745.1 | |
| CICYT-205 | 437 | 3 | Pig (Sus scrofa) | Spain | GCF_001622975.1 | ||
| 7230532-1 | 1 | Pig (Sus scrofa) | 2000 | Denmark | GCA_000391785.1 | ||
| 2006-70-121 | 0 | Pig (Sus scrofa) | 2006 | Denmark | GCA_000391765.1 | ||
| 1970-07-08 | 0 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000767345.1 | ||
| 70-40-11 | 1 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000804405.1 | ||
| 70-61-3 | 1 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000767355.1 | ||
| 1970-08-02 | 2 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000804415.1 | ||
| 70-36-8 | 2 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000767365.1 | ||
| 70-61-7 | 2 | Pig (Sus scrofa) | 2011 | Denmark | GCA_000804385.1 | ||
| E2071 | 27 | 1 | Poultry | 2001 | Denmark | GCA_000322165.1 | |
| FDAARGOS_397 | 2 | Tonsil crypt | GCA_002554355.1 | ||||
| E0269 | 9 | 3 | Turkey (Meleagris gallopavo) | 1996 | Netherlands | GCA_000321525.1 | |
| E0164 | 26 | 3 | Turkey (Meleagris gallopavo) | 1996 | Netherlands | GCA_000321505.1 | |
| M3K31 | 3 | Vulture | 2010 | Spain | GCF_001039515.1 | ||
| 58M | 1 | Wooly mammoth (Mammuthus primigenius) | 2014 | Russia | GCF_001280775.1 |