TABLE 5.
Genusa | Number of sequences analyzedb | Occurrence of copper/silver tolerance determinants | ||||
---|---|---|---|---|---|---|
pco c | sil d | pco/sil e | Yersiniabactin synthesisf | pco/silP and yersiniabactin synthesisg | ||
Citrobacter | 60 genomes | 10 | 10 | 10 | 3 | 0 |
50 plasmids | 0 | 0 | 0 | 0 | ||
Cronobacter | 29 genomes | 1 | 1 | 1 | 0 | 0 |
22 plasmids | 6 | 6 | 6 | 0 | ||
Enterobacter | 167 genomes | 22 | 28 | 21 | 0 | 0 |
121 plasmids | 6 | 7 | 6 | 0 | ||
Escherichia | 946 genomes | 33 | 31 | 30 | 121 | 18 |
901 plasmids | 7 | 11 | 7 | 0 | ||
Klebsiella | 674 genomes | 2 | 3 | 2 | 82 | 30 |
628 plasmids | 92 | 92 | 91 | 2 | ||
Kluyvera | 6 genomes | 0 | 0 | 0 | 0 | 0 |
4 plasmids | 1 | 1 | 1 | 0 | ||
Kosakonia | 10 genomes | 1 | 1 | 1 | 0 | 0 |
4 plasmids | 0 | 0 | 0 | 0 | ||
Pantoea | 66 genomes | 0 | 0 | 0 | 0 | 0 |
61 plasmids | 0 | 1 | 0 | 0 | ||
Raoultella | 9 genomes | 1 | 1 | 1 | 4 | 1 |
8 plasmids | 0 | 0 | 0 | 0 | ||
Salmonella | 602 genomes | 14 | 13 | 13 | 5 | 0 |
369 plasmids | 4 | 6 | 4 | 7 | ||
Serratia | 64 genomes | 0 | 0 | 0 | 0 | 0 |
27 plasmids | 2 | 2 | 2 | 0 | ||
Yersinia | 192 genomes | 0 | 0 | 0 | 33 | 0 |
153 plasmids | 0 | 0 | 0 | 0 |
Genera of Enterobacteriaceae harboring pco, sil, and/or ybt.
Number of completed genomic and plasmid sequences of respective genera available for Microbial Genome BLAST (http://blast.ncbi.nlm.nih.gov; accessed 13 September 2017).
Analysis (blastn) using sil from pMG101 (GenBank accession number NG_035131.1 -[153]) as query.
Analysis (blastn) using pco (GenBank accession number X83541.1; [146]) and sil (accession number KC146966.1 [151]) from pRJ1004 as query.
Analysis (tblastn) using Ybt peptide/polyketide synthetase HMWP1 (GenBank accession number AAC69588.1 [246]) as query.
Number of strains harboring pco/sil and ybt with determinant being located on chromosome and/or plasmid, respectively.