Antibodies |
|
anti-rhesus IgG1 (clone 7H11) |
Nonhuman primate reagent resource |
RRID: AB_2819312
|
anti-rhesus IgA (clone 9B9) |
Nonhuman primate reagent resource |
RRID: AB_2819305
|
anti-rhesus IgM (clone 2C11-1-5) |
Life Diagnostics |
Cat# 2C11-1-5 |
PE anti-mouse IgG |
ThermoFisher |
Cat# 31861; RRID: AB_429715
|
anti-human CD66b-Pacific Blue |
BioLegend |
Cat# 305112; RRID: AB_2563293
|
PE-Cy5 antihuman CD107a |
BD |
Cat# 555802; RRID: AB_396136
|
PE-Cy7 anti-human CD56 |
BD |
Cat# 557747; RRID: AB_396853
|
APC-Cy7 anti-human CD16 |
BD |
Cat# 557758; RRID: AB_396864
|
Alexa Fluor 700 anti-human CD3 |
BD |
Cat# 557943; RRID: AB_396952
|
PE anti-human MIP-1β |
BD |
Cat# 550078; RRID: AB_393549
|
BV605 anti-human TNF-α |
BioLegend |
Cat# 502936; RRID: AB_2563884
|
FITC anti-human IFN-γ |
BD |
Cat# 340449; RRID: AB_400425
|
|
Bacterial and virus strains |
|
BCG SSI (Danish strain 1331) |
Aeras (IAVI) |
Lot# 050613MF |
Mtb Erdman barcode library |
BEI Resources |
Cat# NR-50781 |
|
Biological samples |
|
Rhesus macaque plasma and BAL |
(Darrah et al.6) |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
LAM |
BEI Resources |
Cat# NR-14848 |
PPD |
Statens Serum Institute |
Batch RT50 |
PstS1 |
BEI Resources |
Cat# NR-14859 |
Apa |
BEI Resources |
Cat# NR-14862 |
HspX |
BEI Resources |
Cat# NR-14860 |
Ag85A |
BEI Resources |
Cat# NR-53525 |
Ag85B |
BEI Resources |
Cat# NR-53526 |
Mpt64 |
BEI Resources |
Cat# NR-49435 |
GroES |
BEI Resources |
Cat# NR-14861 |
Zaire ebolavirus glycoprotein |
R&D Systems |
Cat# 9016-EB |
GolgiStop |
BD |
Cat# 554724 |
C1Q |
Sigma |
Cat# C1740 |
Sulfo-NHS-LC-LC Biotin |
ThermoFisher |
Cat# A35358 |
Hydrazide biotin |
ThermoFisher |
Cat# 21339 |
FITC-conjugated neutravidin beads |
ThermoFisher |
Cat# F8776 |
|
Deposited data |
|
Data and metadata |
This study |
Data and metadata associated with this study at FAIRDOMHub: https://fairdomhub.org/studies/1198
|
Custom code |
This study |
Scripts to reproduce the computational analysis at Zenodo: https://doi.org/10.5281/zenodo.13880858.29
|
|
Experimental models: Cell lines |
|
THP-1 |
ATCC |
Cat# TIB202 |
|
Software and algorithms |
|
R – pROC package (version 1.18.0) |
(Robin et al.30) |
https://cran.r-project.org/web/packages/pROC/pROC.pdf |
R – glmnet package (version 3.0-2) |
(Friedman et al.31) |
https://cran.r-project.org/web/packages/glmnet/index.html |
R – mixOmics package (version 6.10.9) |
(Rohart et al.32) |
https://bioconductor.org/packages/release/bioc/html/mixOmics.html |
Python – NetworkX library (version 3.9.12) |
NetworkX |
https://networkx.org/documentation/stable/install.html |
R – lme4 package (version 1.1-31) |
CRAN |
https://cran.r-project.org/web/packages/lme4/index.html |
|
Other |
|
FlexMap 3D |
Luminex |
N/A |
BD LSR II |
BD |
N/A |