TABLE 5.
Nucleotide and amino acid identitiesa
| Strain | Similarity in genomic regionb
|
|||||||
|---|---|---|---|---|---|---|---|---|
| 2C
|
3D1
|
|||||||
| Nucleotide
|
Amino acid
|
Nucleotide
|
Amino acid
|
|||||
| Virus | % | Virus | % | Virus | % | Virus | % | |
| P3/119 | 84.0 | P3/119 | 100.0 | P3/Fin | 84.0 | P2/W-2 | 98.5 | |
| P3/Leon | 84.0 | P3/Leon | 100.0 | P1/Mah | 83.5 | CA21 | 98.5 | |
| P3/Sab | 83.7 | P3/Sab | 99.1 | P1/Sab | 83.0 | P2/Lan | 98.5 | |
| P2-V/406/80 | P3/Fin | 83.1 | P3/Fin | 99.1 | P3/Sab | 83.0 | P1/Mah | 97.0 |
| P2/Sab | 83.1 | P2/Sab | 98.3 | P3/Leon | 83.0 | P3/Fin | 97.0 | |
| CA24 | 73.8 | CA21 | 78.6 | CA24 | 83.0 | P1/Sab | 97.0 | |
| CA21 | 72.0 | CB5 | 70.9 | CA21 | 83.0 | P3/Sab | 97.0 | |
| P3/119 | 81.1 | P3/Fin | 100.0 | P3/Sab | 86.5 | P2/Lan | 98.5 | |
| P3/Leon | 81.1 | P3/Leon | 100.0 | P3/Fin | 86.5 | CA21 | 98.5 | |
| P2/Lan | 81.1 | P3/Sab | 99.0 | P3/Leon | 86.5 | P1/Mah | 97.0 | |
| P2-V/553/80 | P3/Sab | 81.1 | P2/Lan | 98.3 | P1/Mah | 86.5 | P3/Fin | 97.0 |
| P3/Fin | 80.9 | P2/Sab | 98.3 | P1/Sab | 84.0 | P1/Sab | 97.0 | |
| CA24 | 74.1 | CA21 | 78.6 | CA21 | 83.5 | P3/Sab | 97.0 | |
| CA21 | 71.8 | CB5 | 70.9 | CA24 | 80.5 | P3/Leon | 97.0 | |
| P3/119 | 80.9 | P3/119 | 98.3 | P1/Mah | 84.9 | P2/Lan | 98.5 | |
| P3/Leon | 80.9 | P3/Leon | 98.3 | P1/Sab | 84.4 | CA21 | 98.5 | |
| P2/Sab | 80.9 | P3/Sab | 97.4 | CA24 | 82.4 | P1/Mah | 97.0 | |
| P2-V/598/80 | P3/Sab | 80.9 | P2/Sab | 96.6 | P3/Sab | 81.4 | P1/Sab | 97.0 |
| P2/Lan | 79.4 | P2/Lan | 96.6 | P3/Leon | 81.4 | P3/Fin | 97.0 | |
| CA24 | 72.0 | CA21 | 78.6 | P2/Sab | 81.4 | P3/Sab | 97.0 | |
| CA21 | 70.0 | CB5 | 69.2 | CA21 | 81.4 | CB4 | ||
| P2/Lan | 82.6 | P3/Fin | 100.0 | CA21 | 85.0 | P2/Lan | 97.0 | |
| P2/Sab | 82.3 | P3/Leon | 100.0 | P2/Lan | 84.5 | CA21 | 97.0 | |
| P3/Fin | 82.0 | P3/Sab | 99.0 | P3/Fin | 83.0 | P1/Mah | 97.0 | |
| P2-V/146/81 | P3/Leon | 82.0 | P2/Lan | 99.0 | P1/Mah | 80.5 | P1/Sab | 95.5 |
| P1/Sab | 79.4 | P2/Sab | 98.3 | P3/Sab | 80.5 | P3/Fin | 95.5 | |
| CA24 | 72.0 | CA21 | 78.6 | P1/Sab | 80.0 | P3-Sab | 95.5 | |
| CA21 | 70.0 | CB5 | 70.9 | CA24 | 79.0 | P3/Leon | 95.5 | |
| P3/Sab | 84.5 | P2/Lan | 97.0 | |||||
| P3/Fin | 84.5 | CA21 | 97.0 | |||||
| P3/Leon | 84.5 | P1/Mah | 97.0 | |||||
| P2-V/057/87 | P2-Sab | 100.0 | P2-Sab | 100.0 | P1/Mah | 83.5 | P1/Sab | 95.5 |
| P1-Sab | 83.5 | P3/Fin | 95.5 | |||||
| CA21 | 82.5 | P3/Sab | 95.5 | |||||
| CA24 | 82.0 | P3/Leon | 95.5 | |||||
| P3/Fin | 82.0 | P3/119 | 99.1 | P1/Mah | 87.0 | P2/Lan | 98.5 | |
| P2/Sab | 81.4 | P3/Leon | 99.1 | P1/Sab | 86.5 | CA21 | 98.5 | |
| P2/W-2 | 80.2 | P3/Sab | 98.3 | CA21 | 85.5 | P1/Mah | 97.0 | |
| P2-V/263/66 | P2/Lan | 79.9 | P1/Mah | 96.6 | P2/Lan | 84.5 | P3/119 | 96.9 |
| P3/Leon | 79.9 | P3/Fin | 96.6 | CA24 | 84.5 | P3/Fin | 96.9 | |
| CA24 | 73.9 | CA21 | 79.8 | P3/Sab | 82.0 | P3/Leon | 96.9 | |
| CA21 | 71.7 | CB5 | 70.7 | P3/Leon | 82.0 | P3/Sab | 97.0 | |
Nucleotide and amino acid identities between the 2C and 3D genomic regions of the V/W recombinants and those of the most similar enteroviruses strains found in the GenBank are shown.
For each V/W recombinant, the nearest polio strains and NEPVs are listed. Nucleotides corresponding to positions 4546 to 4895 (2C) and 6172 to 6371 (3D1) of the Sabin 2 PV have been considered for this analysis. Virus strains (GenBank accession number) are as follows: P1/Mah, PV1/Mahoney (V01148); P1/Sab, P1/Sabin (V01150); P2/Lan, P2/Lansing (M12197); P2/Sab, P2/Sabin (X00595); P2/W-2, (D00625); P3/Fin, P3/Finland/23127/84 (X 04468); P3/Leon, P3/Leon/37 (K01392); P3/Sab, P3/Sabin (X00595); P3/119, P3/119 (X01076); CA24, coxsackievirus A24 (D90457); CA21, coxsackievirus A21 (D00538); CB4, coxsackievirus B4 (X05690); CB5, coxsackievirus B5 (X67706).