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. 2024 Nov 12;13(12):e00789-24. doi: 10.1128/mra.00789-24

TABLE 1.

Details of SARS-CoV-2 samples, sequence analysis, and hyperlinks of the study

S. No. Sample name Collection_Date Hyperlinked SRA accession ID GenBank accession ID GC content (%) Lineage (Nextclade) clade_who Length qc.overallScore (Nextclade) Genome coverage (%) (Nextclade) Number of reads Sequencing depth
1 BB466 2021-12 SRR29872869 PP825474 39 BA.1.17.2 Omicron 29,760 60.61 91.6 139,487 605.13
2 qc5158 2022-01 SRR29872868 PP825475 39.80 BA.2 Omicron 29,805 11.56 95.7 236,261 1,470.6
3 qc8160 2022-02 SRR29872857 PP825476 39.40 BA.2 Omicron 29,648 18.46 94.4 141,771 725.48
4 qc8213 2022-02 SRR29872846 PP825477 39 BA.2.10 Omicron 29,636 14.08 94.8 278,256 1,550.1
5 qc8215 2022-02 SRR29872835 PP825478 38.70 BA.2 Omicron 29,797 36.76 93.3 255,107 1,525
6 qc8219 2022-02 SRR29872824 PP825479 39.40 BA.2.10 Omicron 29,621 19.43 94.2 245,897 1,388.8
7 qc8220 2022-02 SRR29872823 PP825480 38.50 BA.2.10 Omicron 29,781 5.58 96.6 182,429 1,242.1
8 qc8221 2022-02 SRR29872822 PP825481 39 BA.2 Omicron 29,640 4.92 96.2 256,586 1,565.4
9 qc8228 2022-02 SRR29872821 PP825482 41.30 BA.2 Omicron 29,755 64.59 91.3 176,481 905.09
10 qc8249 2022-01 SRR29872820 PP825483 38.80 BA.2 Omicron 29,708 94.81 89.6 169,426 925.52
11 qc8258 2022-02 SRR29872867 PP825484 38.80 BA.2 Omicron 29,778 13.55 95.3 190,765 1,127.2
12 qc8260 2022-02 SRR29872866 PP825485 37.90 BA.2.10 Omicron 29,602 54.21 91.4 225,175 1,652.3
13 qc8261 2022-02 SRR29872865 PP825486 38.20 BA.2.10 Omicron 29,703 15.12 94.9 284,906 1,597.7
14 qc8273 2022-01 SRR29872864 PP825487 38.80 BA.2 Omicron 29,678 16.84 94.6 177,154 1,098.1
15 qc8274 2022-01 SRR29872863 PP825488 39.10 BA.2 Omicron 29,747 44.49 92.5 134,298 751.64
16 qc8280 2022-01 SRR29872862 PP825489 37.90 BA.2.10 Omicron 29,638 16.72 94.5 281,714 1,847.9
17 qc8281 2022-01 SRR29872861 PP825490 39.40 BA.2.2 Omicron 29,805 12.99 95.5 321,001 1,749.7
18 qc8317 2022-02 SRR29872860 PP825491 38.80 BA.2.10 Omicron 29,637 17.36 94.4 130,560 714.6
19 qc8319 2022-02 SRR29872859 PP825492 38.40 BA.2 Omicron 29,774 17.48 95 175,423 1,061.8
20 qc8321 2022-02 SRR29872858 PP825493 37.90 BA.2 Omicron 29,799 60.72 91.7 238,459 1,453.1
21 qc8322 2022-02 SRR29872856 PP825494 39 BA.2.2 Omicron 29,631 17.53 94.6 162,709 1,035.8
22 qc8323 2022-02 SRR29872855 PP825495 39.30 BA.2 Omicron 29,697 18.02 94.6 169,050 951.75
23 qc8324 2022-02 SRR29872854 PP825496 41.80 BA.2 Omicron 29,647 9.86 95.4 347,504 1,853.2
24 qc8326 2022-02 SRR29872853 PP825497 41.10 BA.2 Omicron 29,642 8.09 95.6 398,228 2,255.1
25 qc8327 2022-02 SRR29872852 PP825498 39 BA.2 Omicron 29,660 71.68 90.6 247,540 1,428.3
26 qc8338 2022-02 SRR29872851 PP825499 39.80 BA.2.10 Omicron 29,713 61.01 91.4 239,720 1,205.3
27 qc8342 2022-02 SRR29872850 PP825500 40.90 BA.2 Omicron 29,578 49.26 91.7 236,197 1,134.4
28 qc8344 2022-02 SRR29872849 PP825501 38.60 BA.2 Omicron 29,634 8.13 95.6 271,237 1,608.3
29 QC8512 2022-03 SRR29872848 PP825502 38.70 BA.2 Omicron 29,729 0.69 99.6 154,684 1,217.7
30 QC8514 2022-03 SRR29872847 PP825503 41.30 BA.2 Omicron 29,722 30.41 93.6 77,197 456.37
31 QC8516 2022-03 SRR29872845 PP825504 39.30 BA.2.10 Omicron 29,729 0 98.7 152,397 1,006
32 QC8532 2022-03 SRR29872844 PP825505 42.20 BA.2 Omicron 29,774 14.1 95.4 170,158 999.32
33 QC8534 2022-03 SRR29872843 PP825506 39.40 BA.2.2 Omicron 29,776 0.98 97.9 108,161 718.66
34 QC8538 2022-03 SRR29872842 PP825507 39.90 BA.2 Omicron 29,729 36.22 93.2 171,852 1,127.5
35 QC8598 2022-03 SRR29872841 PP825508 38.40 BA.2 Omicron 29,775 0 99.4 140,043 1,101.9
36 QC8629 2022-03 SRR29872840 PP825509 39.90 BA.2 Omicron 29,781 1.56 99.7 139,410 956.51
37 QC8630 2022-03 SRR29872839 PP825510 44.30 BA.2.10 Omicron 29,441 80.47 89.5 88,085 381.77
38 QC8636 2022-03 SRR29872838 PP825511 38.80 BA.2 Omicron 29,779 0 99 124,409 956.03
39 QC8638 2022-03 SRR29872837 PP825512 43.80 BA.2 Omicron 29,635 70 90.7 83,769 398.32
40 QC8641 2022-03 SRR29872836 PP825513 40.20 BA.2.10 Omicron 29,698 9.96 95.6 73,226 497.95
41 QC8644 2022-03 SRR29872834 PP825514 43.20 BA.2 Omicron 29,682 17.39 94.7 117,215 591.27
42 QC8651 2022-03 SRR29872833 PP825515 39.80 BA.2 Omicron 29,771 38.81 93.1 131,622 945.49
43 QC8661 2022-03 SRR29872832 PP825516 39.70 BA.2 Omicron 29,776 5.02 98 83,146 577.5
44 QC8663 2022-03 SRR29872831 PP825517 43.90 BA.2 Omicron 29,741 39.46 92.9 70,942 291.18
45 QC8664 2022-03 SRR29872830 PP825518 39.40 BA.2 Omicron 29,723 2.48 97.4 145,775 1,031.2
46 QC8665 2022-03 SRR29872829 PP825519 40.20 BA.2 Omicron 29,729 1.02 97.7 137,181 929.15
47 QC8667 2022-03 SRR29872828 PP825520 44.40 BA.2.10.1 Omicron 29,755 31.57 93.5 112,736 433.42
48 QC8668 2022-03 SRR29872827 PP825521 40.50 BA.2.10 Omicron 29,739 0 99.5 100,208 657.97
49 QC8710 2022-03 SRR29872826 PP825522 41 BA.2 Omicron 29,779 51.57 92.3 106,539 740.48
50 QC8711 2022-03 SRR29872825 PP825523 40.20 BA.2 Omicron 29,781 1.37 97.7 137,732 998.91
51 QC8712 2022-03 SRR29874965 PP825524 39.90 BA.2 Omicron 29,709 55.25 91.8 183,189 1,347.3
52 QC8714 2022-03 SRR29874964 PP825525 44 BA.2 Omicron 29,568 58.27 91.2 88,203 345.46
53 QC8731 2022-03 SRR29874934 PP825526 38.60 BA.2.10 Omicron 29,789 0 99.8 180,103 1,353.3
54 QC8732 2022-03 SRR29874923 PP825527 39.10 BA.2 Omicron 29,773 0 99.2 134,732 998.56
55 QC8733 2022-03 SRR29874959 PP825528 39.70 BA.2 Omicron 29,744 0.02 98.5 62,387 437.29
56 QC8734 2022-03 SRR29874948 PP825529 43.40 BA.2 Omicron 29,779 1.6 97.6 63,998 361.41
57 QC8735 2022-03 SRR29874947 PP825530 50.20 BA.2 Omicron 29,755 77.51 90.6 61,243 276.08
58 QC8736 2022-03 SRR29874946 PP825531 40.50 BA.2 Omicron 29,779 0 99.7 110,527 745.68
59 QC8737 2022-03 SRR29874945 PP825532 38.40 BA.2.3 Omicron 29,729 0 99.2 106,569 831.41
60 QC8738 2022-03 SRR29874943 PP825533 38.20 BA.2 Omicron 29,776 0.09 98.5 97,165 770.57
61 QC8768 2022-03 SRR29874963 PP825534 38.80 BA.2 Omicron 29,773 13.36 95.4 83,925 639.71
62 QC8803 2022-02 SRR29874944 PP825535 38.20 BA.2 Omicron 29,729 0 98.8 150,622 1,178.4
63 QC8812 2022-02 SRR29874942 PP825536 39.10 BA.2 Omicron 29,726 22.54 94.3 103,461 742.99
64 QC8837 2022-02 SRR29874941 PP825537 38.50 BA.2 Omicron 29,745 0 98.8 106,001 808.3
65 QC8844 2022-03 SRR29874940 PP825538 38.70 BA.2 Omicron 29,769 5.57 96.6 60,147 455.91
66 QC8845 2022-03 SRR29874939 PP825539 41.50 BA.2 Omicron 29,729 11.64 95.5 76,449 440.91
67 QC8847 2022-03 SRR29874938 PP825540 40 BA.2.10 Omicron 29,790 7.23 96.4 79,020 542.74
68 QC8849 2022-03 SRR29874937 PP825541 40.10 BA.2 Omicron 29,729 8.11 96 122,295 813.73
69 QC8850 2022-03 SRR29874936 PP825542 38.20 BA.2 Omicron 29,766 2.75 97.2 97,401 769.71
70 QC8851 2022-03 SRR29874935 PP825543 38.40 BA.2.10 Omicron 29,792 3.72 97.1 80,651 648.05
71 QC8852 2022-03 SRR29874933 PP825544 39.40 BA.2 Omicron 29,777 2.81 97.2 163,295 1,178.1
72 QC8853 2022-03 SRR29874932 PP825545 38.10 BA.2 Omicron 29,805 85.87 90.4 83,370 630.61
73 QC8854 2022-03 SRR29874931 PP825546 38.50 BA.2 Omicron 29,781 40.68 93 112,793 856.61
74 QC8856 2022-03 SRR29874930 PP825547 38.40 BA.2 Omicron 29,778 93.59 90 66,083 500.9
75 QC8858 2022-03 SRR29874929 PP825548 38.90 BA.2 Omicron 29,781 91.52 90.1 97,493 710.69
76 QC8868 2022-03 SRR29874928 PP825549 41.20 BA.2 Omicron 29,779 7.8 96.2 147,903 909.59
77 QC8870 2022-03 SRR29874927 PP825550 38.40 BA.2 Omicron 29,781 13.31 95.5 106,570 770.01
78 QC8911 2022-03 SRR29874926 PP825551 39.40 BA.2 Omicron 29,781 8.28 96.2 127,597 948.84
79 QC8912 2022-03 SRR29874925 PP825552 42.60 BA.2 Omicron 29,744 94.02 89.9 63,355 366.15
80 QC8913 2022-03 SRR29874924 PP825553 40.70 BA.2 Omicron 29,729 80.67 90.5 82,204 584.12
81 QC8914 2022-03 SRR29874922 PP825554 40.50 BA.2 Omicron 29,781 3.78 97 89,511 637.07
82 QC8916 2022-03 SRR29874921 PP825555 39.30 BA.2 Omicron 29,805 42.35 92.9 106,977 761.39
83 QC8917 2022-03 SRR29874920 PP825556 42.50 BA.2 Omicron 29,770 69.31 91.1 114,848 615.2
84 QC8920 2022-03 SRR29874919 PP825557 41.30 BA.2 Omicron 29,773 71.31 91.1 112,709 765.84
85 QC8927 2022-03 SRR29874918 PP825558 38.20 BA.2 Omicron 29,755 78.81 90.6 95,313 751.59
86 QC8938 2022-03 SRR29874917 PP825559 41 BA.2 Omicron 29,768 30.54 93.7 103,909 672.93
87 QC8944 2022-03 SRR29874916 PP825560 39.80 BA.2.31.1 Omicron 29,771 30.54 93.7 131,260 973.09
88 QC8946 2022-03 SRR29874962 PP825561 41 BA.2 Omicron 29,779 7.7 96.3 150,787 1,019
89 QC8948 2022-03 SRR29874961 PP825562 40.30 BA.2 Omicron 29,770 91.03 90 66,787 490.69
90 QC8957 2022-03 SRR29874960 PP825563 40.50 BA.2 Omicron 29,781 3.93 97 251,044 1,876.1
91 QC8958 2022-03 SRR29874958 PP825564 42.60 BA.2 Omicron 29,771 22.33 94.5 252,585 1,414
92 QC8965 2022-03 SRR29874957 PP825565 39.20 BA.2 Omicron 29,787 4.43 98.5 276,743 2,243.1
93 QC8966 2022-03 SRR29874956 PP825566 40.50 BA.2.50 Omicron 29,814 0.02 98.7 237,570 1,813.3
94 QC8967 2022-03 SRR29874955 PP825567 40.50 BA.2.12.1 Omicron 29,781 6.7 96.4 343,467 2,534.5
95 QC8968 2022-03 SRR29874954 PP825568 40.70 BA.2.50 Omicron 29,781 12.46 95.6 110,853 818.2
96 QC8969 2022-03 SRR29874953 PP825569 40.40 BA.2 Omicron 29,781 0 98.9 175,990 1,358
97 QC8975 2022-03 SRR29874952 PP825570 41.20 BA.2 Omicron 29,779 19.43 94.8 124,140 897.66
98 QC8979 2022-03 SRR29874951 PP825571 38.90 BA.2 Omicron 29,760 82.54 90.4 110,570 895.92
99 QC8981 2022-03 SRR29874950 PP825572 39.60 BA.2.3 Omicron 29,744 19.62 94.6 213,190 1,735.1
100 QC9031 2022-03 SRR29874949 PP825573 38.40 BA.2.3 Omicron 29,776 1.49 97.6 120,816 1,087.3
101 QC9032 2022-03 SRR29875192 PP825574 38.30 BA.2.3 Omicron 29,763 10.7 95.7 139,954 1,237.8
102 QC9033 2022-03 SRR29875191 PP825575 38.60 BA.2.3 Omicron 29,781 0 98.8 139,818 1,228.1
103 QC9034 2022-03 SRR29875180 PP825576 38.30 BA.2.9 Omicron 29,799 36.58 93.3 164,730 1,474.4
104 QC9035 2022-03 SRR29875169 PP825577 39.20 BA.2 Omicron 29,779 9.66 96 174,932 1,504.9
105 QC9036 2022-03 SRR29875158 PP825578 40.50 BA.2 Omicron 29,781 0.01 98.7 190,449 1,516.8
106 QC9037 2022-03 SRR29875147 PP825579 42.10 BA.2 Omicron 29,779 12.22 95.6 258,998 1,845.1
107 QC9038 2022-03 SRR29875146 PP825580 39.90 BA.2 Omicron 29,781 2.74 97.3 237,240 1,990.9
108 QC9039 2022-03 SRR29875145 PP825581 40.80 BA.2 Omicron 29,775 0.1 98.5 154,325 1,211.5
109 QC9051 2022-03 SRR29875144 PP825582 38.20 BA.2 Omicron 29,734 0.17 99.6 183,635 1,857.9
110 QC9052 2022-03 SRR29875143 PP825583 38.40 BA.2 Omicron 29,734 0.54 97.9 256,284 2,459.7
111 QC9053 2022-03 SRR29875190 PP825584 40.20 BA.2 Omicron 29,729 0 99.1 218,645 1,753.8
112 QC9055 2022-03 SRR29875189 PP825585 42.60 BA.2 Omicron 29,729 0.42 98 190,770 1,236.4
113 QC9056 2022-03 SRR29875188 PP825586 40.20 BA.2 Omicron 29,786 17.36 99.6 271,489 2,311
114 QC9057 2022-03 SRR29875187 PP825587 39.30 BA.2 Omicron 29,729 0.68 97.8 187,485 1,645.5
115 QC9058 2022-03 SRR29875186 PP825588 41.80 BA.2 Omicron 29,729 19.16 94.6 204,331 1,099.9
116 QC9059 2022-03 SRR29875185 PP825589 40.90 BA.4.2 Omicron 29,714 22.06 94.4 101,473 604.09
117 QC9081 2022-03 SRR29875184 PP825590 38.20 BA.2 Omicron 29,729 0.04 98.4 159,177 1,571.5
118 QC9097 2022-03 SRR29875183 PP825591 38.50 BA.2 Omicron 29,675 9.77 95.6 229,436 1,808.7
119 QC9116 2022-03 SRR29875182 PP825592 39.30 BA.2 Omicron 29,809 0.62 98.1 234,880 2,084.3
120 QC9117 2022-03 SRR29875181 PP825593 40.70 BA.2.10 Omicron 29,781 13.23 95.5 132,163 1,049
121 SQ1513 2021-11 SRR29875179 PP825594 38.90 B.1.617.2 Delta 29,821 68.38 91.4 177,005 789.19
122 SQ1529 2021-12 SRR29875178 PP825595 39 B.1.617.2 Delta 29,855 46.04 94.4 518,055 2,193.2
123 SQ1537 2021-12 SRR29875177 PP825596 38.60 B.1.617.2 Delta 29,806 16.6 95.2 198,401 891.36
124 sq1539 2021-12 SRR29875176 PP825597 38.40 B.1.617.2 Delta 29,454 51.05 91.1 140,714 597.45
125 SQ1580 2021-12 SRR29875175 PP825598 38.60 B.1.617.2 Delta 29,821 60.8 91.8 455,614 2,032.7
126 SQ1635 2021-12 SRR29875174 PP825599 39 B.1.617.2 Delta 29,614 56.11 91.4 113,343 498.8
127 sq1637 2021-12 SRR29875173 PP825600 38.40 B.1.617.2 Delta 29,819 1.72 97.6 171,968 766.33
128 sq1640 2021-12 SRR29875172 PP825601 38.40 B.1.617.2 Delta 29,860 58.85 92 313,925 1,327.5
129 SQ1651 2021-12 SRR29875171 PP825602 39.50 B.1.617.2 Delta 29,785 40.97 93.2 179,134 769.07
130 sq1654 2021-12 SRR29875170 PP825603 38.70 B.1.617.2 Delta 29,814 16.75 96.2 145,600 1,070.6
131 sq1655 2021-12 SRR29875168 PP825604 39.40 B.1.617.2 Delta 29,794 3.39 97.5 254,578 1,110.5
132 SQ1665 2021-12 SRR29875167 PP825605 38.50 B.1.617.2 Delta 29,819 10.78 96.5 133,604 603.22
133 SQ1667 2021-12 SRR29875166 PP825606 39.20 B.1.617.2 Delta 29,806 23.02 96 115,505 495.66
134 sq1672 2021-12 SRR29875165 PP825607 38 B.1.617.2 Delta 29,492 1.64 97.4 207,546 912.01
135 SQ1680 2021-11 SRR29875164 PP825608 39.90 B.1.617.2 Delta 29,806 42.7 93.3 139,687 585.89
136 SQ1682 2021-11 SRR29875163 PP825609 39.70 B.1.617.2 Delta 29,798 72.56 91.1 207,047 873.18
137 SQ1689 2021-11 SRR29875162 PP825610 39 B.1.617.2 Delta 29,820 21.81 94.8 206,476 900.04
138 sq1690 2021-11 SRR29875161 PP825611 38.40 AY.4 Delta 29,691 88.05 90.2 81,881 348.81
139 sq1702 2021-11 SRR29875160 PP825612 38.80 AY.75 Delta 29,817 30.92 96.6 346,627 1,501.6
140 sq1703 2021-11 SRR29875159 PP825613 38.50 B.1.617.2 Delta 29,735 81.46 90.4 81,599 348.63
141 sq1705 2021-11 SRR29875157 PP825614 38.80 B.1.617.2 Delta 29,821 22.86 94.7 185,534 810.47
142 SQ1707 2021-11 SRR29875156 PP825615 39.80 B.1.617.2 Delta 29,811 38.93 95.9 145,128 616.64
143 SQ1713 2021-11 SRR29875155 PP825616 41.20 B.1.617.2 Delta 29,785 52.98 92.2 190,191 749.53
144 SQ1720 2021-12 SRR29875154 PP825617 39.30 B.1.617.2 Delta 29,889 12.46 97.2 1,097,224 4,765.7
145 sq1723 2021-12 SRR29875153 PP825618 38.80 B.1.617.2 Delta 29,827 58.95 91.8 223,543 954.62
146 sq1729 2021-12 SRR29875152 PP825619 38.30 B.1.617.2 Delta 29,738 91.99 92.6 117,549 499.5
147 sq1742 2021-12 SRR29875151 PP825620 38.20 B.1.617.2 Delta 29,636 13.05 95.1 265,739 1,152.6
148 SQ1752 2021-12 SRR29875150 PP825621 38.90 B.1.617.2 Delta 29,878 76.47 94.9 355,941 1,565.4
149 SQ1755 2021-12 SRR29875149 PP825622 39.20 B.1.617.2 Delta 29,885 10.48 96.1 808,264 3,431.5
150 sq1780 2021-12 SRR29875148 PP825623 38.10 B.1.617.2 Delta 29,315 90.31 88.9 110,417 470.77
151 sq1819 2021-12 SRR29876922 PP825624 38.20 B.1.617.2 Delta 29,573 70.81 90.5 46,018 200.75
152 SQ1841 2021-12 SRR29876921 PP825625 38.90 B.1.617.2 Delta 29,887 21.63 95.4 960,625 4,271
153 SQ1868 2021-12 SRR29876862 PP825626 38.90 B.1.617.2 Delta 29,748 58.66 91.9 138,073 599.77
154 SQ1871 2021-12 SRR29876851 PP825627 42.60 B.1.617.2 Delta 29,871 67.18 91.5 546,357 1,719.4
155 SQ1874 2021-12 SRR29876916 PP825628 38.70 B.1.617.2 Delta 29,819 47.9 93.8 154,688 680.96
156 SQ5043 2021-09 SRR29876905 PP825629 38.50 B.1.617.2 Delta 29,819 3.82 97.4 974,178 4,394.8
157 sq5149 2022-01 SRR29876894 PP825630 41.40 BA.2 Omicron 29,584 88.01 89.5 163,335 744.84
158 sq5150 2022-01 SRR29876883 PP825631 39 BA.2 Omicron 29,755 23.47 94.2 218,801 1,082.5
159 sq5151 2022-01 SRR29876873 PP825632 39.40 BA.2.2 Omicron 29,781 5.98 96.6 173,514 1,000.1
160 sq5152 2022-01 SRR29876871 PP825633 38.90 BA.2.2 Omicron 29,802 6.61 96.4 210,124 1,004
161 sq5153 2022-01 SRR29876920 PP825634 39.10 AY.76 Delta 29,598 160.68 89.1 182,923 914.95
162 sq5154 2022-01 SRR29876872 PP825635 39.40 BA.2 Omicron 29,755 25.15 94.1 154,101 892.92
163 sq5157 2022-01 SRR29876870 PP825636 39.60 BA.2.10 Omicron 29,755 38.85 93 208,367 869.91
164 sq5207 2022-01 SRR29876869 PP825637 38.60 BA.1.1 Omicron 29,752 69.2 91.1 237,055 1,295.5
165 sq5208 2022-01 SRR29876868 PP825638 38.60 BA.1.1 Omicron 29,727 74.73 90.7 126,607 583.6
166 sq5209 2022-01 SRR29876867 PP825639 38.10 BA.1.1 Omicron 29,752 46.34 92.4 253,489 1,285.2
167 sq5215 2022-01 SRR29876866 PP825640 38.50 BA.2.10 Omicron 29,632 31.53 93.1 210,497 1,052.7
168 sq5218 2022-01 SRR29876865 PP825641 38.40 BA.2.10 Omicron 29,807 4.39 96.9 278,136 1,430.4
169 sq5220 2022-01 SRR29876864 PP825642 38.10 BA.1.1 Omicron 29,752 23.83 94.3 253,216 1,516.1
170 sq5224 2022-01 SRR29876863 PP825643 38 BA.2.10 Omicron 29,792 14.72 95.3 229,726 1,252.5
171 sq5226 2022-01 SRR29876861 PP825644 38.60 BA.2.10 Omicron 29,772 15.97 95 348,822 2,029.8
172 sq5230 2022-01 SRR29876860 PP825645 39 BA.2.10 Omicron 29,704 28.13 93.6 347,876 1,944.6
173 sq5234 2022-01 SRR29876859 PP825646 38 BA.2.10 Omicron 29,772 6.07 96.4 289,439 1,610.9
174 sq5236 2022-01 SRR29876858 PP825647 39 BA.2.10 Omicron 29,755 32.79 93.4 146,310 768.35
175 sq5240 2022-01 SRR29876857 PP825648 38.10 BA.2.10 Omicron 29,755 24.41 94.1 266,493 1,470.9
176 sq5248 2022-01 SRR29876856 PP825649 38.50 BA.2.10 Omicron 29,699 4.71 96.4 233,513 1,462.2
177 sq5254 2022-01 SRR29876855 PP825650 39 BA.2 Omicron 29,742 11.56 95.5 200,688 1,111.9
178 sq5257 2022-01 SRR29876854 PP825651 38.90 BA.2.10 Omicron 29,797 30.99 93.7 131,641 824.97
179 sq5260 2022-01 SRR29876853 PP825652 38.60 BA.2.10 Omicron 29,584 25.15 93.5 271,286 1,550.4
180 sq5303 2022-01 SRR29876852 PP825653 38.40 BA.2 Omicron 29,773 1.11 97.7 384,010 2,044.3
181 sq5304 2022-01 SRR29876850 PP825654 38.50 BA.1.1 Omicron 29,752 8.26 96 267,500 1,395.2
182 sq5373 2022-01 SRR29876849 PP825655 38.70 BA.1 Omicron 29,798 632.37 96.3 259,655 1,661
183 sq5379 2022-01 SRR29876848 PP825656 39.30 BA.2 Omicron 2,9652 28.48 93.4 281,980 1,290.9
184 sq5392 2022-01 SRR29876847 PP825657 39 BA.2 Omicron 29,781 0.15 98.4 308,318 1,936.6
185 sq5400 2022-01 SRR29876846 PP825658 38.20 BA.2 Omicron 29,805 0.68 98 220,174 1,302.4
186 sq5406 2022-01 SRR29876845 PP825659 39 BA.2 Omicron 29,805 5.32 96.7 322,155 1,746.6
187 sq5408 2022-01 SRR29876844 PP825660 38.70 BA.2 Omicron 29,803 11.53 95.7 215,785 1,091.3
188 sq5452 2022-01 SRR29876919 PP825661 38.50 BA.1.1 Omicron 29,804 0.67 98 293,342 1,820
189 sq5476 2022-01 SRR29876918 PP825662 38.30 BA.2.10 Omicron 29,664 6.74 95.9 166,667 864.34
190 sq5489 2022-01 SRR29876917 PP825663 37.90 BA.2 Omicron 29,807 2.85 97.2 243,357 1,375.1
191 sq5498 2022-01 SRR29876915 PP825664 38.60 BA.2 Omicron 29,755 34.81 93.3 308,560 1,624.5
192 sq5502 2022-01 SRR29876914 PP825665 38.90 BA.1 Omicron 29,611 32.75 93 193,930 1,104.5
193 sq5509 2022-01 SRR29876913 PP825666 37.90 B.1.617.2 Delta 29,769 13.83 97.1 239,876 1,447.8
194 sq5514 2022-01 SRR29876912 PP825667 38.40 BA.2 Omicron 29,799 3.53 97 367,112 2,013.3
195 sq5519 2022-01 SRR29876911 PP825668 38.50 BA.2.10 Omicron 29,755 81.47 90.4 249,932 1,436.6
196 sq5526 2022-01 SRR29876910 PP825669 39.60 BA.2 Omicron 29,755 32.79 93.4 216,286 990.24
197 sq6155 2022-02 SRR29876909 PP825670 38.90 BA.2 Omicron 29,626 14.64 94.7 230,171 1,574.4
198 sq6157 2022-02 SRR29876908 PP825671 39.70 BA.2.10 Omicron 29,660 15.04 94.8 266,996 1,628.6
199 sq6158 2022-02 SRR29876907 PP825672 41 BA.2.10 Omicron 29,653 15.38 94.7 171,948 939.71
200 sq6164 2022-02 SRR29876906 PP825673 41.30 BA.2.10 Omicron 29,701 9.16 95.7 228,609 1,208.5
201 sq6167 2022-02 SRR29876904 PP825674 39.20 BA.2 Omicron 29,704 12.46 95.2 232,901 1,288.5
202 sq6168 2022-02 SRR29876903 PP825675 39.30 BA.2.10 Omicron 29,806 12.17 95.6 309,913 1,877.6
203 sq6218 2022-02 SRR29876902 PP825676 38.80 BA.2 Omicron 29,628 12.04 95 307,585 1,864.9
204 sq6220 2022-02 SRR29876901 PP825677 38.30 BA.2 Omicron 29,584 13.31 94.7 175,806 1,171.7
205 sq6224 2022-02 SRR29876900 PP825678 39.10 BA.2 Omicron 29,805 11.76 95.7 345,097 2,066.6
206 sq6227 2022-02 SRR29876899 PP825679 38.80 BA.2 Omicron 29,779 19.85 94.6 257,662 1,601.1
207 SQ6292 2022-03 SRR29876898 PP825680 38.90 BA.2.12.1 Omicron 29,780 4.06 96.9 234,714 1,846
208 SQ6294 2022-04 SRR29876897 PP825681 39.50 BA.2 Omicron 29,780 13.34 95.5 265,917 1,967
209 SQ6296 2022-04 SRR29876896 PP825682 41.50 BA.2.43 Omicron 29,728 35.51 93.2 96,169 609.25
210 SQ6297 2022-04 SRR29876895 PP825683 40.50 BA.2.78 Omicron 29,779 6.38 96.5 222,689 1,663.5
211 SQ6298 2022-04 SRR29876893 PP825684 38.50 BA.2.43 Omicron 29,775 2.64 97.3 222,151 1,798.6
212 SQ6299 2022-04 SRR29876892 PP825685 39.70 BA.2.43 Omicron 29,771 0 99.3 366,263 2,817.3
213 SQ6301 2022-04 SRR29876891 PP825686 39.10 BA.2 Omicron 29,772 20.85 94.6 327,061 2,558.5
214 SQ6303 2022-04 SRR29876890 PP825687 41.20 BA.2 Omicron 29,734 28.76 93.8 238,759 1,743.1
215 SQ6307 2022-04 SRR29876889 PP825688 38.30 B.1.617.2 Delta 29,821 25 99.5 196,880 1,737.3
216 SQ6308 2022-04 SRR29876888 PP825689 43.30 BA.2.3 Omicron 29,576 46.49 91.9 154,097 789.96
217 SQ6310 2022-04 SRR29876887 PP825690 45.60 BA.2.3 Omicron 29,738 87.73 90.2 229,620 893.29
218 SQ6311 2022-04 SRR29876886 PP825691 40.80 BA.1.1 Omicron 29,819 7.47 97.8 324,671 2,308.9
219 SQ6316 2022-01 SRR29876885 PP825692 39.10 BA.2.38 Omicron 29,775 1.53 97.9 313,996 2,449.5
220 SQ6321 2022-05 SRR29876884 PP825693 44.40 BA.2 Omicron 29,426 65.25 90.3 132,006 498.47
221 SQ6324 2022-04 SRR29876882 PP825694 39.80 BA.2 Omicron 29,679 18.49 94.5 289,957 2,361.7
222 SQ6325 2022-04 SRR29876881 PP825695 38.80 BA.2 Omicron 29,729 5.85 96.4 210,095 1,540.1
223 SQ6330 2022-05 SRR29876880 PP825696 40 BA.2.12.1 Omicron 29,665 8.82 95.7 207,454 1,653.4
224 SQ6339 2022-05 SRR29876879 PP825697 38.40 BA.2 Omicron 29,789 12.72 96.5 361,239 3,407.8
225 SQ6360 2022-05 SRR29876878 PP825698 39.20 BA.2 Omicron 29,441 41.44 91.8 189,082 1,360.9
226 SQ6364 2022-05 SRR29876877 PP825699 39.70 BA.2.9 Omicron 29,441 52.91 91.1 208,067 1,797.8
227 SQ6366 2022-05 SRR29876876 PP825700 39.30 BA.2 Omicron 29,435 84.23 89.4 170,110 1,201.8
228 SQ6400 2022-02 SRR29876875 PP825701 43 BA.2.38 Omicron 29,657 17.08 94.6 566,559 3,000.6
229 ssq5500 2022-01 SRR29876874 PP825702 38.30 BA.1.17.2 Omicron 29,804 44.2 92.8 244,823 1,697.3