. 2024 Aug 30;196(4):2395–2404. doi: 10.1093/plphys/kiae463

Table 1.

Genes downregulated in the lcr1 mutant under VLC conditions

Gene ID	Gene name	Description	VLC-0.3 h				VLC-2.0 h
			lcr1-1/WT		lcr1-1/lcr1-1:LCR1		lcr1-1/WT		lcr1-1/lcr1-1:LCR1
			log₂FC	FDR	log₂FC	FDR	log₂FC	FDR	log₂FC	FDR
Cre02.g095065			0.98	7.1.E–02	−0.54	7.8.E–01	−1.20	6.1.E–03	−1.78	1.9.E–04
Cre02.g095067			0.47	2.5.E–01	−0.52	7.1.E–01	−1.26	4.3.E–04	−1.70	3.6.E–05
Cre03.g162800	LCI1	Low-CO₂-inducible membrane protein	−0.30	6.4.E–01	−0.80	7.0.E–01	−1.98	5.2.E–04	−2.03	3.1.E–03
Cre04.g223100	CAH1	Carbonic anhydrase	−3.49	5.9.E–27	−2.24	1.9.E–10	−2.86	3.0.E–19	−2.30	3.8.E–11
Cre06.g278137			−1.90	2.4.E–06	−0.05	9.9.E–01	−3.41	8.9.E–21	−1.85	1.0.E-04
Cre08.g364050			−0.10	7.6.E–01	−1.01	1.6.E–02	−1.04	9.2.E–05	−1.75	2.8.E–10
Cre08.g381450	OPR35	OctotricoPeptide Repeat Protein	−1.71	8.7.E–10	−1.23	2.6.E–03	−2.62	1.3.E–21	−1.47	8.5.E–06
Cre09.g399552	LCR1	Myb-like transcription factor	−2.54	4.4.E–05	−1.74	1.9.E–01	−2.55	6.3.E-05	−2.20	4.3.E-03
Cre10.g426800			−2.37	2.9.E–20	−2.12	2.3.E–14	−2.79	1.6.E–27	−2.20	7.4.E-16
Cre10.g448200	ARL9	ARF-like GTPase	−1.84	1.3.E–09	−0.45	7.3.E–01	−2.19	1.3.E–13	−1.14	3.0.E–03
Cre12.g553350	LCI6	Low-CO₂-inducible protein 6	0.69	5.9.E–02	−0.96	1.9.E–01	−1.64	9.5.E–07	−1.43	4.9.E–04
Cre16.g684022			−2.68	2.8.E–20	−1.86	6.4.E–08	−2.34	1.1.E–15	−1.20	1.6.E–03

Differentially expressed genes in lcr1-1 cells, with false discovery rate < 0.01 and log₂FC < −1, in 0.04% CO₂ aerated conditions for 0.3 or 2 h were indicated. WT, wild type; VLC, very low-CO₂.