Table 1 -.

GIAB AJ trio (HG002 - son, HG003 - father, and HG004 - mother) and orthogonal datasets for HG002 mosaic benchmark generation. Sequencing data was generated using NIST reference material DNA (NIST RM 8391 for HG002 and NIST RM 8392 trio). See supplemental table 6 for non-reference material (Coriell - NA24385) datasets.

Library	NIST ID	Coverage	SRA Accession #	Publication
Illumina 2×148bp	HG002	300×	SRX847862-SRX848005	Zook et al. 2016
Illumina 2×148bp	HG003	300×	SRX848006-SRX848173	Zook et al. 2016
Illumina 2×148bp	HG004	300×	SRX848174-SRX848317	Zook et al. 2016
BGI 2×150bp	HG002	100×	SRX22242218	This study
Element 2×150bp, standard	HG002	81×	SRR30945810	This study
Element 2×150bp, long insert	HG002	55×	SRR30945809	This study
PacBio HiFi Sequel 10kb	HG002	30×	SRX5327410	Wenger et al. 2019
PacBio HiFi Sequel 15kb	HG002	28×	SRX6908796, SRX6908797, SRX6908798	Unpublished
PacBio HiFi Revio 20kb	HG002	48×	NA	Unpublished*

^*Data publicly available on the PacBio website (https://www.pacb.com/connect/datasets/) as well as GIAB FTP site (https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/HG002_NA24385_son/PacBio_HiFi-Revio_20231031).