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. Author manuscript; available in PMC: 2024 Dec 14.
Published in final edited form as: Cell. 2024 Oct 28;187(25):7183–7195.e24. doi: 10.1016/j.cell.2024.10.002

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains
Staphylococcus aureus RN4220 N/A N/A
Escherichia coli Rosetta 2 (DE3) - Novagen Millipore Sigma 71400–3
PhiNM1gamma6-GFP Baca et al.12 N/A
Phi80alpha-vir Banh et al.29 N/A
PhiNM4gamma4 Banh et al.29 N/A
PhiJ1 Banh et al.29 N/A
PhiJ2 Banh et al.29 N/A
PhiJ4 Banh et al.29 N/A
Chemicals, peptides, and recombinant proteins
ATP NEB P0756S
dATP NEB N0440S
ITP Sigma Aldrich I0879–50MG
dITP Thermo Fisher R1191
Adenosine Sigma Aldrich A9251–1G
Inosine Sigma Aldrich I4125–1G
AMP Sigma Aldrich 01930–5G
UTP NEB N0450L
CTP NEB N0450L
cA2 Biolog C 088
cA3 Biolog C 362
cA4 Biolog C 335
cA6 Biolog C 332
Deposited data
Cad1 apo This study EMDB: 45241 and PDB: 9C67
Cad1 ATP asymmetric This study EMDB: 45245 and PDB: 9C6F
Cad1 ATP symmetric This study EMDB: 45244 and PDB: 9C6C
Cad1 cA4 ATP This study EMDB: 45277 and PDB: 9C77
Cad1 cA6 ATP This study EMDB: 45466 and PDB: 9CDB
Cad1 RNA-seq raw reads This study Deposited in NCBI Sequence Read Archive with BioProject: PRJNA1152273
apo-Cad1-CARF This study PDB: 9C6A
Cad1-CARF + cA6 This study PDB: 9C68
Cad1-CARF-cA4 This study PDB: 9C69
Oligonucleotides
See Data S1 N/A N/A
Recombinant DNA
See Data S1 N/A N/A
Software and algorithms
CCP4i2 Suite Winn et al.42 https://www.ccp4.ac.uk
Foldseek van Kempen et al.18 https://search.foldseek.com/search
CRISPRCasTyper Russel et al.43 https://crisprcastyper.crispr.dk/#/submit
UCSF Chimera Pettersen et al.44 https://www.cgl.ucsf.edu/chimera/
cryoSPARC Punjani et al.45 https://cryosparc.com
HISAT2 Kim et al.46 http://daehwankimlab.github.io/hisat2/
Coot Emsley and Cowtan47 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
REDItools V2 Flati et al.48 https://github.com/BioinfoUNIBA/REDItools
Alphafold 3 Abramson et al.49 https://alphafoldserver.com
Python 3.9 Python https://www.python.org/downloads/release/python-390/
Prism 10.1.1 GraphPad https://www.graphpad.com
Prism 9.4.0 GraphPad https://www.graphpad.com