Table 2. The quality preprocessing results of sequencing data.
Sample | Raw reads | Raw bases | Clean reads | Clean bases | Valid bases (%) | Q30 (%) | GC (%) |
---|---|---|---|---|---|---|---|
A1 | 51.68M | 7.75G | 50.77M | 7.36G | 94.99 | 95.45 | 50.56 |
A2 | 47.32M | 7.10G | 46.55M | 6.75G | 95.14 | 95.61 | 50.55 |
A3 | 49.18M | 7.38G | 48.31M | 6.98G | 94.67 | 95.53 | 50.58 |
A4 | 50.71M | 7.61G | 49.89M | 7.26G | 95.45 | 95.59 | 50.63 |
B1 | 50.81M | 7.62G | 50.07M | 7.28G | 95.54 | 95.71 | 50.41 |
B2 | 47.84M | 7.18G | 47.03M | 6.79G | 94.69 | 95.66 | 50.42 |
B3 | 49.75M | 7.46G | 48.94M | 7.12G | 95.36 | 95.58 | 50.47 |
B4 | 47.77M | 7.17G | 47.02M | 6.84G | 95.41 | 95.59 | 50.38 |
C1 | 48.71M | 7.31G | 47.92M | 7.00G | 95.78 | 95.40 | 50.51 |
C2 | 50.53M | 7.58G | 49.73M | 7.25G | 95.62 | 95.45 | 50.63 |
C3 | 47.49M | 7.12G | 46.74M | 6.81G | 95.56 | 95.48 | 50.58 |
C4 | 49.09M | 7.36G | 48.35M | 7.05G | 95.81 | 95.56 | 50.40 |
D1 | 51.49M | 7.72G | 50.70M | 7.38G | 95.58 | 95.61 | 50.97 |
D2 | 48.85M | 7.33G | 48.13M | 7.02G | 95.78 | 95.67 | 50.41 |
D3 | 50.84M | 7.63G | 50.02M | 7.30G | 95.76 | 95.50 | 50.69 |
D4 | 49.92M | 7.49G | 49.17M | 7.18G | 95.84 | 95.52 | 50.54 |