Table 3. The sequence alignment results.

Sample	Total reads	Total mapped reads	Multiple mapped	Uniquely mapped	Reads mapped in proper pairs
A1	50,766,214	49,156,500 (96.83%)	2,280,465 (4.49%)	46,876,035 (92.34%)	45,843,372 (90.30%)
A2	46,546,504	45,538,486 (97.83%)	2,336,844 (5.02%)	43,201,642 (92.81%)	42,254,164 (90.78%)
A3	48,312,504	47,231,242 (97.76%)	2,315,223 (4.79%)	44,916,019 (92.97%)	43,925,758 (90.92%)
A4	49,892,192	48,785,113 (97.78%)	2,424,642 (4.86%)	46,360,471 (92.92%)	45,378,354 (90.95%)
B1	50,070,298	48,794,515 (97.45%)	2,439,041 (4.87%)	46,355,474 (92.58%)	45,282,068 (90.44%)
B2	47,026,778	45,801,828 (97.40%)	2,383,940 (5.07%)	43,417,888 (92.33%)	42,335,186 (90.02%)
B3	48,944,648	47,705,368 (97.47%)	2,352,061 (4.81%)	45,353,307 (92.66%)	44,280,588 (90.47%)
B4	47,021,142	45,808,787 (97.42%)	2,320,541 (4.94%)	43,488,246 (92.49%)	42,466,164 (90.31%)
C1	47,916,624	46,334,625 (96.70%)	2,243,561 (4.68%)	44,091,064 (92.02%)	43,144,824 (90.04%)
C2	49,728,658	48,666,831 (97.86%)	2,427,556 (4.88%)	46,239,275 (92.98%)	45,222,388 (90.94%)
C3	46,735,166	45,727,789 (97.84%)	2,102,670 (4.50%)	43,625,119 (93.35%)	42,665,788 (91.29%)
C4	48,345,436	47,321,138 (97.88%)	2,473,394 (5.12%)	44,847,744 (92.77%)	43,895,872 (90.80%)
D1	50,700,630	49,525,576 (97.68%)	2,311,604 (4.56%)	47,213,972 (93.12%)	46,137,922 (91.00%)
D2	48,129,460	47,064,360 (97.79%)	2,412,489 (5.01%)	44,651,871 (92.77%)	43,664,660 (90.72%)
D3	50,023,998	48,914,220 (97.78%)	2,416,502 (4.83%)	46,497,718 (92.95%)	45,468,210 (90.89%)
D4	49,165,792	48,075,893 (97.78%)	2,216,470 (4.51%)	45,859,423 (93.28%)	44,836,940 (91.20%)