Table 1.

Overview of the number of proteins up- or downregulated in the comparisons^a

			Regulated
Comparison	Total	(Dis)-appearing	Quantitatively	Significantly	Q_sense ≥2
CM0: up	490	346	144	53	18
CM0: down	470	315	155	76	0
CE0: up	193	79	114	61	3
CE0: down	393	320	73	27	1
0AC: up	387	339	48	14	nfc
0AC: down	330	263	67	19	nfc
AM0: up	244	190	54	25	9
AM0: down	472	375	97	29	4
AE0: up	327	296	31	10	2
AE0: down	234	176	58	13	0
Sum	3540	2699	841	327	37

^aThe total number of proteins upregulated/appearing or downregulated/disappearing is recorded in the second column. The first column lists the comparisons CM0 (CH34 metal-shocked to the control), CE0 (metal-starvation to the control), 0AC (AE104 to CH34 under nonchallenging conditions), AM0 (AE104 metal-shocked to the control), and AE0 (metal-starvation to the control). The proteins that disappeared or appeared and were not found in one of the conditions but in the other are listed in the third column. Quantitative results were defined as those with at least a single determination in each of the two conditions, with a two-fold ratio and a distance value >1. Significant results were those that came from at least two determinations in each of the two conditions, with a two-fold ratio and a distance value >1. The last column lists the significantly regulated proteins, which could be correlated with a significantly changed abundance of their sense RNA. The comparison between CH34 and AE104 control cells was not considered for correlation with the transcriptome data (nfc, not further considered).