Table II.

Analysis of TAPIR nad SDR repeat elements in tomato BAC 240K04

Name and Location	Length (bp)/AT content	Feature	Shared by and the Locations
TAPIR1, 93801	335, 64%	Foldback	AF001000 L.e. TAPG 1, 5′
			AF001001 L.e. TAPG 2, 5′
TAPIR2, 95674	–	–	AF001002 L.e. TAPG 4, 3′
			X15853, L.e. TAP1, intron
TAPIR3, 46351	–	–	AF179442 L.e. plasma membrane H+-ATPase isoform LHA2, 5′
			AJ002236 L. pim. Cf-9 resistance gene cluster, intron
SDR1, 39050	300, 60%	N/A	M88487 L.e. ACC synthase, 5′
			X67143 L.e. yellow flesh mutant mRNA for phytoene synthase, 3′ half
SDR2, 48401	400, 72%	gagaaagagagaaa Motifs	AF001001 L.e. TAPG 2, 3′Z12028 L. pim. gene encoding vacuolar invertase, 3′
			Z12027 L.e. gene for vacuolar invertase, 3′
SDR3, 91001	150, 84%	N/A	AJ272307 L. pen. lin 5 gene for beta fructosidase, first intron
			X13497 S.t. wound-induced genes, intergenic: 3′WIN1 and 5′WIN2
			AJ006379 L.e. subtilase (sbt2) gene, 5′
			AJ277064 L.e. PR-5 gene for pathogenesis-relatedprotein, 5′
			M59427 L. per proteinase inhibitor I gene, 5′
			U68072 L.e. HMG2 gene, 5′ before retrotransposon ToRTL
			M37304 L.e. polygalacturonase, exons 1–9, fourth intron
			AF220602 L. pim. Rio Grande 76R Pto locus, repeat region
			AF273333 L.e. clone BAC 19, intron
SDR4, 116711	250, 47%	SolSINE	AF034411, L.e. cytosolic Cu, Zn superoxidedismutase, intron
		(Rebatchouk and Narita, 1997)	U75644 L.e. farnesyl-protein transferase beta subunit, three copies, introns
			Y10603 L.e. ldh2 gene, intron
			Z27233 S.t. (STAC1) gene for ACC acid synthase, 3′

L.e., L. esculentum; L. pim., L. pimpinellifolium; L. pen., Lycopersicon pennellii; S.t., Solanum tuberosum; L. per., Lycopersicon peruvianum; ACC, 1-aminocyclopropane-1-carboxylate; TAP: tomato anionic peroxidase; N.A., not applicable.